- Probe CUST_34862_PI390587928
- Source Contig U35_12993
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34862_PI390587928 | Hv_44K_v2 | TACAAGAAGTTCAAATACCCCTCGACGTTCTCCATACAGACAGTCTCCCAAATGGATATC | 740 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.233 | 0.636 | 1.242 | 1.696 | 0.735 | 1.063 |
| Raw | 3.637 | 18.305 | 36.771 | 74.109 | 12.529 | 19.692 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375177 | 2035 | 3e-22 | 1309 - 1367 | 98 | 59 / 60 | plus | ABC37864 |
| MLOC | MLOC_19267.3 | 2262 | 3e-22 | 618 - 676 | 98 | 59 / 60 | minus | ABC37864 |
| MLOC | MLOC_19267.5 | 1575 | 3e-22 | 573 - 631 | 98 | 59 / 60 | minus | ABC37864 |
| MLOC | MLOC_19267.1 | 2215 | 3e-22 | 622 - 680 | 98 | 59 / 60 | minus | ABC37864 |
| MLOC | MLOC_19267.2 | 2211 | 3e-22 | 622 - 680 | 98 | 59 / 60 | minus | ABC37864 |
| MLOC | MLOC_19267.4 | 1150 | 3e-22 | 575 - 633 | 98 | 59 / 60 | minus | ABC37864 |
| JLOC1 | JLOC1_13364.6 | 1962 | 1e-22 | 1247 - 1305 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13364.5 | 1992 | 1e-22 | 1277 - 1335 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13364.4 | 1914 | 1e-22 | 1199 - 1257 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13364.3 | 1758 | 1e-22 | 1043 - 1101 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13364.2 | 1792 | 1e-22 | 1077 - 1135 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_13364.1 | 1722 | 1e-22 | 1007 - 1065 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC24745 | 823 | 3e-25 | 741 - 800 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_12993 | 823 | 3e-25 | 741 - 800 | 100 | 60 / 60 | plus |
Contig Sequence (823 bp)
>U35_12993 823 Hv_44K_v2 TTTGGATAATATAATATGCAGACACATGGATTTACTACAGATGGAATCCCTGAAGCTGGT GACATGATTCGGATGGATGTAGTTGGAGGCTTTGTCTTACAGAGGATTACCAAGGAAAGA AGTTTTTTCAGGGCAGTAGCTAATATGGACATTAAGCTAGACTTTGTCCCCCCATGGCTG ATCAACTTTATGTCAAGACAGCTCATCGGCAGTGGGCATAAGCTATACCAGAAGGCTGTT AGTACTGTGGCCGCTTGTGATGAAGATTACAAGCAAGCTTTACGAGCACCGCTCTATGCA AGAATACGCGAGTACCAGCATTCTGCTGACAAGGCGAAGGTGGCTCCAGTTGAGGAAAGC GCTAATGAATTGCTCCCCGAGAATCCCATTGTACATAATCCTCTGGCTGTCACTAATTTC ACACCATGCAGTGAGATTATTGAAGAGGAGAGTGAACAGAACACATCTTTTAAGGTGGAT AATGTTGCAACCGGCTTTTCTAGCCAACCAGCCGGGCAAGCGCAGCAAGTTGAAAATAAG TCTTCCACTAGTCCTGACAGAACAGTCAAGCAAGCACAGCAAGTCGAAAATAAACCGTTG ATTAGTCCTGAGGTGCAGAAGGCTTTGGGCATACTGGACACAGCTATTGCAGTTCTTCAA GGCAACAGATCTGCAAACATCAGTGCTCTCAGAAAGCTCCTCGGTTATGATGCAGCATCG GAAGAAGGCAGTGCCATCAGTACAAGAAGTTCAAATACCCCTCGACGTTCTCCATACAGA CAGTCTCCCAAATGGATATCCTCTTGCCACACCACCTCATGAT
Homology of Contig U35_12993 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g36070.4 | 447 | 1e-96 | protein|expressed protein |
| Brachypodium v1_2 | Bradi4g16140.1 | 533 | 1e-107 | |
| Arabidopsis v10 | None |