barSeed - Barley Seed Development Database

Probe CUST_34855_PI390587928

Source Contig U35_48925

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34855_PI390587928	Hv_44K_v2	CAGTCGAATATGGGTGTAAGAACTACTTTACTGGAATAGTAGAATATTCCTCCACAAAAA	12	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354378	4429	3e-21	923 - 982	97	58 / 60	minus	ABC10365 ABC10837
Harvest35	U35_48925	230	3e-25	13 - 72	100	60 / 60	minus

Contig Sequence (230 bp)

>U35_48925 230 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTGGAGGAATATTCTACTATTCCAGTAAAGTAGTTCTTACACC
CATATTCGACTGGTCAACATCACGCCCATGTACAATATTTCCTTTTATATGAATACTACC
GCAGTCCCAGGATTCAAAGTTTTTATCAATCAAAACCCATTTTTATTCTATATGCGCTAC
ATCTGACAAATACAAATGCGCCAGAACTAACACGACACCCATTCTACTGT

Homology of Contig U35_48925 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None