barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3484_PI390587928Hv_44K_v2GGGCTGTGTGTCTCTTTCTTGAAGAAGAGAAGATGTTGTATCCTTCTTTTGAAAATACTG21GeneList: grey60
MasterList: Hydrolysis_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.7921.9490.9910.8740.3600.405
Raw 196.615228.71499.281141.18319.36724.086



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37596232343e-213094 - 31549759 / 61plus ABC06481 ABC42227
MLOCMLOC_53061.129303e-21113 - 1739759 / 61minus ABC06481 ABC42227
JLOC1JLOC1_34050.130752e-212832 - 28929759 / 61plus
Harvest21ABC422276443e-2522 - 8110060 / 60minusABC42227
Harvest21ABC0648125706e-222373 - 24339759 / 61plusABC06481
Harvest35U35_444756443e-2522 - 8110060 / 60minus
Harvest35U35_200525756e-222373 - 24339759 / 61plus



Contig Sequence (644 bp)

>U35_44475 644 Hv_44K_v2
TTTTTTTTTTTTTTTTAAAAACAGTATTTTCAAAAGAAGGATACAACATCTTCTCTTCTT
CAAGAAAGAGACACACAGCCCATGCATACCCGCAACACCAGCAAAATAATCTTCTGCACC
TTACTCCCCCCTACACTCCATTCCAGGACCAGCCTCGACTACCAGCTGGTCGCTTTTGAA
CAATTCATGGAGATACAGAGCAGAGCACCAATCCTAATCTGAAATCACAATGCTAGAAAT
GGCAAATGGCCTTCTAAATCCTCCAGCCACGTCTACGCCGACTCGGTAGTACTTTACAGT
TGAACTTCACCTATGTACCAGGAGAGCATACCGCCTCGACCGCCACCCTCTTCATCACAT
TCGGGCAGGGGTCTCCGCCGAAGTTGTCGGGGGAGATGGTGACGGCGCATCTCTGCTTCC
CGATGCAATTCTCAAGAACAGTCTGTGACTTGGTTGAATGGCACTGCCCTTGTTCGAAAC
TTCCGCAAGTCCCAAGAGGTGTCCCGAAGCTTGCAAACTTGATGGCAGAAATAGACTGCC
CAGGTGCGCATCTTAGATGTACCTTCGACCTGCGCAACTCAGGTTTAGCTTCCCCTGAGT
TCTCAGTTTGCCAGTTCTTGATACTTGGATGAAACTCTGATACA



Homology of Contig U35_44475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi1g74050.18402e-54
Arabidopsis v10None