barSeed - Barley Seed Development Database

Probe CUST_34849_PI390587928

Source Contig U35_24970

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34849_PI390587928	Hv_44K_v2	TCAGGCCTAGCCGAATATGGCGATGAATAGATGTGATTGCTCCACTGATATTCTAAGCAG	437	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.511	0.484	1.070	1.322	1.811	1.259
Raw	10.601	15.002	31.012	49.444	28.186	22.297

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_24970	497	3e-25	438 - 497	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_24970 497 Hv_44K_v2
AACTGACTCCGTGGGCGTTCGTCAAGCCGGGCACGGAACGCGCTGCTGCTGCCGCGATCC
GAGCGAGCTCCACAAGCCGACGCCGGCGGCGAGGAGGAAGGACGGCTCCGATGGACGCGT
CGGGCGAGATGCAGTGCGTGGGGCGGCTGGAGATCGCCGCGCCGCCGCCGGCGCGCTACC
TCCGCGTGGGCTCCCTCCCGGTCCCCACCGACGACTCCGCCTACCCCCCCGCCCTCCTCC
CCTCCGCTTCCCCGACTGGGACTGGAGCTCCAAGGTATCAAATGCTGCCACTGGAGACCG
ACCCCAACACACTCCCCGTGATTCCAAACCTCCCAGAGAAGGTTTTCCCAACGGATGCAA
AGAGTACTGAAGGATTACGGTATGGAAGTGGACTTTTCAACCAAAACTTATCAAGGAAGT
GTGAAGCACTAGCCGTGTCAGGCCTAGCCGAATATGGCGATGAATAGATGTGATTGCTCC
ACTGATATTCTAAGCAG

Homology of Contig U35_24970 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65320.1	1389	2e-53	protein\|expressed protein
Brachypodium v1_2	Bradi2g56490.1	1408	3e-59
Arabidopsis v10	None