- Probe CUST_34846_PI390587928
- Source Contig U35_24975
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34846_PI390587928 | Hv_44K_v2 | GTTACTAGAGTTGCACCAAACCATCATGTCAAACAGTGGAAAATGTTATGATCTAGTAAT | 236 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.051 | 1.833 | 1.058 | 0.773 | 0.378 | 0.681 |
| Raw | 14945.667 | 9813.810 | 5316.183 | 5592.410 | 1099.017 | 2103.220 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_12528.1 | 338 | 8e-25 | 252 - 311 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26125 | 329 | 3e-25 | 237 - 296 | 100 | 60 / 60 | plus | ABC26125 |
| Harvest35 | U35_24975 | 329 | 3e-25 | 237 - 296 | 100 | 60 / 60 | plus |
Contig Sequence (329 bp)
>U35_24975 329 Hv_44K_v2 GAATAAGATAATTTGAGTCTGACTTATGGAGGGGAAAGTTATTCTTCTTTACTTTATGGT GCTCCTGCAGCTAGGAAACTCCATTGATGATCATTGTGAGATGCGAACTATTCTTTCAAG TCCTAAGTGCACTGAATCAACTTGCCAGACAGCCTGCCAAAAAATTTGGGGACCTGACGT CAAGAGAGCAGAGTGTAGGGTCGTCAACCATCACAAGTTTTGTGATTGCATCATATGTTA CTAGAGTTGCACCAAACCATCATGTCAAACAGTGGAAAATGTTATGATCTAGTAATAAAA TCCTCTTGTGAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_24975 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |