barSeed - Barley Seed Development Database

Probe CUST_34842_PI390587928

Source Contig U35_36950

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34842_PI390587928	Hv_44K_v2	TACGTGGATCTATACCTCGTGAGAGCCTGCACGTCAACTGACATGGAGTAGTATATTCTA	628	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77559.6	1253	2e-24	794 - 853	100	60 / 60	minus	ABC10053
MLOC	MLOC_77559.7	1463	2e-24	1004 - 1063	100	60 / 60	minus	ABC10053
Harvest21	ABC32466	688	3e-25	629 - 688	100	60 / 60	plus
Harvest35	U35_36950	688	3e-25	629 - 688	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_36950 688 Hv_44K_v2
GCCTCGTGCCGCAAGTGTAGGCGAGCGACAAGGCATGGCTCTCCACTTCGTCCTCAACAC
CGGCGCCAAGATCCCGTCCGTCGGGCTCGGCACCTGGCAGTCCGAGCCCGGCGTCGTCGG
CGACGCCGTCTACGCCGCCGTCAAGGTGCGTGCTTTCTTCCCCGTTTTAACAAGTTCGCG
GCATCTGAATTTAATTTATTGTGCGCATCATTATATGTGCAGGCCGGTTATCGGCACATC
GACTGTGCTCAAGTCTACGGCAACGAGAAAGAGGTAACCTAATCGGTCCTCTCAAATTAA
CGATCTTTTTCTCATCAAAAGGCAGGACAAAAACCTACCACTACGCTTTTTCGCAGATCG
GATTCGCTCTCAAGAAGGTGTTCGACGAGGGCGTAACCACTCGGAAAGATCTTTTCATCA
CCTCCAAACTATGGTGTGTCTGTCTTTTGAACATTGTCCCGTTCTTCGATTTGAACATTG
TCTACTCACACACTGCAAGTGCAAATCATTTGATTTGAGAAGTTCACGAGCAAAAATTTC
AACCTGAACTTGTTTTAGGTGCACTAACCACGCGCCGGAGGACGTCCCGGTGGCGCTGGA
CGGCACGCTCCAGGACCTGCAGACCGACTACGTGGATCTATACCTCGTGAGAGCCTGCAC
GTCAACTGACATGGAGTAGTATATTCTA

Homology of Contig U35_36950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None