- Probe CUST_34839_PI390587928
- Source Contig U35_36953
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34839_PI390587928 | Hv_44K_v2 | AAGGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTATTCAAATGTTATT | 636 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.906 | 1.158 | 1.235 | 1.046 | 0.340 | 0.314 |
| Raw | 150.066 | 136.076 | 129.558 | 170.959 | 20.749 | 20.526 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248907.1 | 1882 | 2e-24 | 694 - 753 | 100 | 60 / 60 | plus | ABC13151 |
| MLOC | AK354354 | 1841 | 2e-24 | 775 - 834 | 100 | 60 / 60 | plus | ABC13151 |
| MLOC | MLOC_80947.1 | 1307 | 2e-24 | 930 - 989 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_35349.3 | 930 | 7e-23 | 433 - 492 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_35349.2 | 819 | 7e-23 | 441 - 500 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_35349.1 | 1055 | 7e-23 | 667 - 726 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_53882.1 | 1340 | 8e-25 | 767 - 826 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22829.2 | 820 | 4e-23 | 433 - 492 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_22829.1 | 810 | 4e-23 | 433 - 492 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32470 | 696 | 3e-25 | 637 - 696 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC11857 | 852 | 3e-25 | 665 - 724 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36953 | 696 | 3e-25 | 637 - 696 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19170 | 1052 | 3e-25 | 669 - 728 | 100 | 60 / 60 | plus |
Contig Sequence (696 bp)
>U35_36953 696 Hv_44K_v2 GCTTCCTCCCTTCCTCCCTTCATTGGATTGGAATTGGAATCGGAATTTGATTGGCAGCCA AATCGAATCGAATCCAATCCAATCCATCGGGACGCCGCCGGCTAAGATCTCCGGCTCATT GCAACCAAGGAAGGAAGGAAGGAAGGAGCGAGGTGTCGGCCTCGGCCTGGACCTGGACCT CGGCCTCGGCGGGCGGGGATGGCGTGGCGGCTGGCCCTGCCGCTGCTCCTCTTCTACTCC CCCATCCTCATTTGCTCATCCTCATCGCAAGAAATCCAAGACAATGATCCCTCCAAATTG TTTAAGAGTGCTTCCGAGATGATGAGCCTCAGCAAATACGACGGAGCACTTGGTCTGCTC AACGCTGTCCTGGAGCTCGACCCTAACCATTCCGAAGCTTACAGGCAGCGCGCGTCAGTG CTCCGCCACAGATGCAGACACAAGGAAGCTGAGAGCGACTACAACAAATTCCTCGAGCTC AAGCCCGGGACTGCTTCAGTGGAAAAGGAGCTAGCTCAGCTGCTGCAGGCTCAGAATGCA TTACAATCTGCTTATACCCAGTCTGATGCTGGGGAATTCTCAAAAGTCCTCGAGTACGTC AACAAAATCGTGCTCGTCTTTTCTCCAGGTTGCTTAAAGGCAAAGCTTCTCAAGGCTAAA GCATTGCTAGCACTGAAAGACTATTCAAATGTTATT
Homology of Contig U35_36953 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g74580.1 | 472 | 4e-56 | protein|dnaJ homolog subfamily C member, putative, expressed |
| Brachypodium v1_2 | Bradi2g62730.1 | 468 | 2e-64 | |
| Arabidopsis v10 | None |