barSeed - Barley Seed Development Database

Probe CUST_34835_PI390587928

Source Contig U35_36957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34835_PI390587928	Hv_44K_v2	ATGCATGCACACTTTGCAGCGAACTGATCACTAATGATGGCCTTTTCTTGATGCAGTTCC	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74315.5	887	2e-24	456 - 515	100	60 / 60	minus	ABC19050
MLOC	MLOC_74315.3	1277	2e-24	944 - 1003	100	60 / 60	minus	ABC19050
MLOC	MLOC_74315.2	940	2e-24	857 - 916	100	60 / 60	minus	ABC19050
JLOC1	JLOC1_49521.1	2413	8e-25	899 - 958	100	60 / 60	minus
Harvest21	ABC32474	729	3e-25	609 - 668	100	60 / 60	minus
Harvest35	U35_36957	729	3e-25	609 - 668	100	60 / 60	minus

Contig Sequence (729 bp)

>U35_36957 729 Hv_44K_v2
GGGCTANNCTTGTCTCTCACACGAAGCAACACAAGAGTTTTTCCTTCCTCTTCCAAGGAA
CCCAACCAAAACACACACGCACACAGAGAGATGAACATCCACTAGCCTCAGATGGACAGA
GGCGTCCTCCTGATGATCGTGCTGGCGGCGGCGGCGACGCTCCTGTGCCTCCCACTGGTG
CTGCCGCCGCTGCCACCGCCGCCGGCCTTCCTGCTCTTCGTCCCCGTGGTGATGATGCTG
CTGCTCTTCTCCCTGGTTCTCTTCCCCTCCACAAACTGCGAGAATCCTCCATCTCCCACC
TTCTCCCAGTAAGAACAACATACGGAGAGAGCCTTACTGCCAGTCAGGTCAGGTGGCTCT
CAGGAGAACTTCTGCTCTGCCTTTCAAGCCCCGGCCAGATGAGGAGCCAGCCATGGTTAT
GTAGAATTACCAAGAAATGAATGTTGATTACCTAGTCATTCCTGGTTTTCTCGCAATTTT
GTGGCTGAGGAAGGCTATACGTTAGCAAGCCGGCAATGAGAACCGCTGCGCCTGCAACAA
AGCCGGGAGGGAGGGTCGACGCCATGCCGATGTACGGCAGCGGTAGAGTGAAAGCGTAGA
TCGACAGCGGAACTGCATCAAGAAAAGGCCATCATTAGTGATCAGTTCGCTGCAAAGTGT
GCATGCATACTTGCATATCTACTTGTACAAGGGAACAATGTCTAGTAATCAGAAATGGAA
TGCTAGTTG

Homology of Contig U35_36957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None