barSeed - Barley Seed Development Database

Probe CUST_34827_PI390587928

Source Contig U35_48936

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34827_PI390587928	Hv_44K_v2	TTTTGGTGTTTGGAACTTTGGTTGCAGTGGCTATTACATAGCCTTGCTTTTGCCAAAAAA	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376223	4366	9e-22	4279 - 4333	100	55 / 55	plus	ABC18058 ABC18076
Harvest35	U35_48936	525	3e-25	11 - 70	100	60 / 60	minus

Contig Sequence (525 bp)

>U35_48936 525 Hv_44K_v2
TTTTTTTTTTTTTTTTGGCAAAAGCAAGGCTATGTAATAGCCACTGCAACCAAAGTTCCA
AACACCAAAAGACAGTGCAAGAAGAAGTTCAACAGTACATAGAACCAGTAAAGTAACAGC
TAAACATGGATGGATTAAACATCAGAAGACAATGGCGCAGAGTCAGCAGGATCTTCCATA
AGTCGATCCACCGTAAGCTTCTCAGGGGCTATGCCAAGTGACTGCCCTACCTCCTGAATC
ACTGGGATAGGAGTGGCAGGAGGTACTTGAGCATCTTCAGTCTCTTGGGATGTAGAGGAC
ATAGGCTTGGCCTTGGGCTTCCTCTTCTTGGGGACATGTGCAGGTAGCTCTTGCAGGATT
GGCTTGAAGCCATCACGCTTGATGGAGCCACGAGTACACCGTCTCACCGAGGAGTCCACC
ACCGGGGTGGCCTTCTTGCGGGTCCCCTTCTTGGATGGAGCAGGAGAGCGAAAAGATAAG
TCTTCTGATGAAGAAGTAGGACTGAGTGGGATTACCTCCTGCAAT

Homology of Contig U35_48936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None