barSeed - Barley Seed Development Database

Probe CUST_34823_PI390587928

Source Contig U35_24980

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34823_PI390587928	Hv_44K_v2	TTACTGCTGGCTTGCACTTGCCACCCAATTCAATAAATTGAGCAATGATTGCGCAAAAAA	671	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.191	1.180	1.080	0.961	0.423	0.384
Raw	419.255	648.177	521.319	739.297	113.219	111.768

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30606.1	1443	9e-22	5 - 59	100	55 / 55	minus	ABC23304
MLOC	AK362524	1752	3e-21	1699 - 1752	100	54 / 54	plus	ABC23304
JLOC1	JLOC1_20222.1	1440	5e-22	1386 - 1440	100	55 / 55	plus
Harvest21	ABC23304	742	3e-25	12 - 71	100	60 / 60	minus	ABC23304
Harvest35	U35_24980	742	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_24980 742 Hv_44K_v2
GGCCAACTAGGGCATCCCACCATTCAAAATCATAGAGTTCCACTTGCCATTAAAGCTCTG
TCTGAGGAGCGAATTGTCTACATAGCCTGTGGAGGATCAACTTCCGCTGCTATATCAGAG
AAAGGTGACTTGTACATGTGGGGAAATGCAAGAGACTGCCAGCTAGGCGTTCCTGATCTT
CCAGAAGTGCAACCATTACCTGTTAAAGTTAATTTTCTTGCTGACGGTGACGAGGATCCA
AGCCCTCCTCGTGTCATCTCGGTTGCAATAGGCGCTTCCCATGCCATGTGTTTGGTCTCC
AGGCAACAGATCCAGAAATAGCACCTATTGTTTTTCAGCTTTGTAAATGCAATTAAATTT
GGACCTCCTAACCTGCGAGTACGCCATGGAGAGGATCATGTTCTCTACTGGATGGAACCT
GCCTACTCAGTTGGTGAAAACTCCTGCTCGGTAAAGCCCGACATCAGCAAGAAACAATAA
TATCACAGGCATGACATACTTCCTTGAAATTTGAGTACTGGGAATTCTCTTAATTAGCGA
TATATTTGTTTCTTGATTGCTCAAGTGATGTGAAACGAGAGATAAAACCGCCCATGTCCC
TTTTAGATTTCGGATTCACATATCCTTTGCTGTAGTTGTTAAGATGAACAAAATTTTGTA
GCATGCTGATTTTACTGCTGGCTTGCACTTGCCACCCAATTCAATAAATTGAGCAATGAT
TGCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38755.1	438	3e-60	protein\|E3 ubiquitin-protein ligase HERC2, putative, expressed
Brachypodium v1_2	Bradi4g37960.1	433	4e-63
Arabidopsis v10	None