barSeed - Barley Seed Development Database

Probe CUST_34820_PI390587928

Source Contig U35_24983

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34820_PI390587928	Hv_44K_v2	GCAGGGATTGAATTTGCTGCCAGCAGGATGTAAAGAGCTTTTGTTTCGTCTGTGAAAAAA	326	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360254	2360	7e-23	2137 - 2196	98	59 / 60	plus	None
MLOC	AK358294	1199	7e-23	1112 - 1171	98	59 / 60	plus	ABC02669 ABC02670 ABC02672 ABC02673
MLOC	MLOC_34427.1	475	7e-23	275 - 334	98	59 / 60	plus	None
JLOC1	JLOC1_22196.1	587	4e-23	281 - 340	98	59 / 60	plus
Harvest35	U35_24983	435	3e-25	327 - 386	100	60 / 60	plus

Contig Sequence (435 bp)

>U35_24983 435 Hv_44K_v2
GCCGCGTACCGGCGCTTCGACGCCAGCAGCGCCTGCGTCTGGCATGGCGGGGCGTTGCCG
ACGCGGTGCGGCGGCGACCACCNNNCCGTTGTTGGCGTCGTCGTGGATGGGGCAGCGGCT
GGACTGGTGGAGCTGGATGACGCTCAACTGGGTGCGCATGAACTACATGACCTACGACTA
CTGCGCCGACCGGAAGCGGTACCCCCACGGGTTCCCCGCCGAGTGCATCATCCCCATCGG
GAGGATTTGATGGGACGGTGGCGTCCATCAGTTCGTTCATGCGTAGCGTAGGCTGTAGAG
AGTTATGCTTCGTCTCGTGACCCCTTGCAGGGATTGAATTTGCTGCCAGCAGGATGTAAA
GAGCTTTTGTTTCGTCTGTGAAAAAAAAAAAAAACATGATCGGAGATTTGTAGGACGCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_24983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None