barSeed - Barley Seed Development Database

Probe CUST_34816_PI390587928

Source Contig U35_24987

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34816_PI390587928	Hv_44K_v2	AGAGCTCAGTTTGTTATTGTGATTGCCATTGTATTACATGATCTCGTTGCTTTTCGATAG	609	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81840.1	2276	2e-24	53 - 112	100	60 / 60	minus	ABC02837 ABC17119 ABC35045
MLOC	MLOC_81840.5	2783	2e-24	4 - 63	100	60 / 60	minus	ABC02837 ABC17119 ABC35045
MLOC	MLOC_81840.4	2901	2e-24	5 - 64	100	60 / 60	minus	ABC02837 ABC17119 ABC35045
MLOC	MLOC_81840.2	2060	2e-24	53 - 112	100	60 / 60	minus	ABC17119 ABC35045
MLOC	MLOC_81840.3	2172	2e-24	53 - 112	100	60 / 60	minus	ABC02837 ABC17119 ABC35045
JLOC1	JLOC1_54437.6	1853	8e-25	1735 - 1794	100	60 / 60	plus
JLOC1	JLOC1_54437.5	2181	8e-25	2063 - 2122	100	60 / 60	plus
JLOC1	JLOC1_54437.4	2626	8e-25	2508 - 2567	100	60 / 60	plus
JLOC1	JLOC1_54437.3	2842	8e-25	2724 - 2783	100	60 / 60	plus
JLOC1	JLOC1_54437.2	1958	8e-25	1840 - 1899	100	60 / 60	plus
JLOC1	JLOC1_54437.1	1629	8e-25	1511 - 1570	100	60 / 60	plus
Harvest35	U35_24987	700	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (700 bp)

>U35_24987 700 Hv_44K_v2
TAAATCAGACCAGGAAATGAAATATACGAGTCATAATTAGGAAGACCAGGATTTACTTGC
ACCTAGCACATACAGCAGCAGAGGTAGATTAGCCTCACTCTTGTGCGCTGTTTGATTTTT
CAGGCGAGCAGGTTCAGACTAGTCTTTTGTGTTGATTTTGCCTTGAGGAAAGTGAGTTAG
CATTAGATTGAACAATTAGGAACAAAAAATATGCAGTTAACTCAGGCTCTATCTCTCTCT
CTCTTAAGCATTTATTTTTGGTATAAGTACAAAGTGCAAGTTGTATTAGAAATAAAACAC
GCGAATGCACAAAATACAGAAACACTATTCTGCTTTAGTTTATGATGGTCGAAAATTTAA
CACATGATGAGAATTGTTTGTTTTTGTTCCTTGTTTCTATTCTTGATCTGTATATGGCAG
CTCTTAAAAATATGGCTGTTTGTTTTACAGGATCTCCAGGCCTAAGAAAGTTGAAGTGCG
AAGCCTCAAAGCCAATTGTGTGAAGCCCTACTTATCCAAGAATGCATAATTATATATTGT
AATAGTAGGCATATCAACTTTGTAAGAGACTGAAAAAATTCATAGTGGTTGCCATTGTAT
TACACTTGTAGAGCTCAGTTTGTTATTGTGATTGCCATTGTATTACATGATCTCGTTGCT
TTTCGATAGTGGATTTTTTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24987 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None