barSeed - Barley Seed Development Database

Probe CUST_34811_PI390587928

Source Contig U35_41126

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34811_PI390587928	Hv_44K_v2	TAATCATCTATTCAGAAGGTCTCTTCCTCTCCCATGGTCCATCAGAATGAAAGTTGCTCT	299	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.410	0.461	1.246	1.807	1.092	0.991
Raw	44.833	72.419	183.740	418.898	91.218	90.355

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66562.2	2297	2e-24	629 - 688	100	60 / 60	plus	ABC17814
MLOC	MLOC_66562.1	2437	2e-24	1110 - 1169	100	60 / 60	minus	ABC17814
MLOC	MLOC_66562.3	2363	2e-24	1010 - 1069	100	60 / 60	minus	ABC17814
JLOC1	JLOC1_43877.1	2380	8e-25	1269 - 1328	100	60 / 60	plus
Harvest35	U35_41126	385	3e-25	300 - 359	100	60 / 60	plus

Contig Sequence (385 bp)

>U35_41126 385 Hv_44K_v2
CTAAAATGCGCCACACGGAACTTCCGACCCGAGAGTCTTCTCGGTGAAGGGGGTTTTGGA
TGTGTGTTTAAAGGGTGGATCGAAGAGAATGGAACTGCACCTGTGAAACCTGGTACAGGT
CTTACAGCTGCTGTCAAGACACTCAATCATGATGGTCTTCAAGGGCACAAAGAATGGGTG
GCAGAAGTTGATTTCCTTGGTAACCTTCACCATCCCAATTTGGTCAAATTAATTGGATAT
TGTGTTGAAGATGACCAAAGATTGCTGGTATATGAATTTATGCCGCGTGGAAGTTTGGAT
AATCATCTATTCAGAAGGTCTCTTCCTCTCCCATGGTCCATCAGAATGAAAGTTGCTCTT
GGGGCAGCACAGGGACTTTCCTTCC

Homology of Contig U35_41126 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19700.1	513	5e-86	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi4g28627.1	496	3e-88
Arabidopsis v10	AT5G15080.1	493	8e-81	Protein kinase superfamily protein \| chr5:4886414-4888555 FORWARD LENGTH=493