- Probe CUST_34810_PI390587928
- Source Contig U35_41127
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34810_PI390587928 | Hv_44K_v2 | TAAGGACTAAACCTCCCTTTTTCCCACTTTCCTTATAATTGCACGGGTAGGCTTTATTAT | 349 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.958 | 1.619 | 1.013 | 0.717 | 0.260 | 0.169 |
| Raw | 324.456 | 425.014 | 233.164 | 260.641 | 33.200 | 23.571 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361844 | 2277 | 2e-24 | 959 - 1018 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_35890.1 | 1132 | 2e-24 | 872 - 931 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_23125.1 | 1192 | 8e-25 | 867 - 926 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_41127 | 409 | 3e-25 | 350 - 409 | 100 | 60 / 60 | plus |
Contig Sequence (409 bp)
>U35_41127 409 Hv_44K_v2 GGCGCTCGCCGTCGAGGTCGAGGCGCTCATGCGCGACGTCATACGCATCGCCAACCGCCT CAACGGCAAGCCCGAGAAGGAGGTCGGGGACCTGCGCCGGGGGCTCTTCCCCACCCCATT CTCCTTCTACGTGGGCAACACCTTCGAGGGCGCGCCCAGGGAGCAGCAGGCGCTGCTCGA GCTTGAGGACACCGCCGCGCGCCTGCGACGGGAGCGGGACACGCTCCGCAACACTCTCAA CTACCTCACCGCCGCGTCTGCTGTCAAGGACGTCTTCCCCTCGTCACCGTCGTCGGGGTG AAGCATCCCCCCCTTTCGCCTCTGGCCTCTGTCCCATCTCGCTCGCCGATAAGGACTAAA CCTCCCTTTTTCCCACTTTCCTTATAATTGCACGGGTAGGCTTTATTAT
Homology of Contig U35_41127 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g32560.1 | 292 | 5e-54 | protein|ATP-dependent protease, putative, expressed |
| Brachypodium v1_2 | Bradi1g26540.1 | 289 | 2e-56 | |
| Arabidopsis v10 | None |