barSeed - Barley Seed Development Database

Probe CUST_34802_PI390587928

Source Contig U35_41136

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34802_PI390587928	Hv_44K_v2	TGATTAGTAAGATCAAGACACTCGGCACTCTTCACTTCATCCCATAGAAAGGTCCCTCAC	5	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252755.1	1285	2e-24	160 - 219	100	60 / 60	minus	ABC18459 ABC26738
MLOC	MLOC_60487.3	3477	7e-23	3068 - 3127	98	59 / 60	plus	ABC18459 ABC26738 ABC30536
MLOC	MLOC_60488.1	7869	7e-23	7460 - 7519	98	59 / 60	plus	ABC18459 ABC26738 ABC30536 ABC34594 ABC37694
MLOC	MLOC_60488.5	3806	7e-23	2145 - 2204	98	59 / 60	plus	ABC03926 ABC03927 ABC18459 ABC26738 ABC30536 ABC34594 ABC39256
MLOC	MLOC_60488.7	5010	7e-23	3349 - 3408	98	59 / 60	plus	ABC03926 ABC03927 ABC18459 ABC26738 ABC30536 ABC34594 ABC39256
MLOC	MLOC_60487.2	3175	7e-23	2766 - 2825	98	59 / 60	plus	ABC18459 ABC26738 ABC30536 ABC34594
MLOC	MLOC_60488.2	9067	7e-23	8658 - 8717	98	59 / 60	plus	ABC18459 ABC26738 ABC30536 ABC34594 ABC37694
MLOC	MLOC_60487.1	2299	7e-23	2076 - 2135	98	59 / 60	plus	ABC18459 ABC26738 ABC30536 ABC34594
JLOC1	JLOC1_39449.2	2682	4e-23	248 - 307	98	59 / 60	minus
JLOC1	JLOC1_39449.1	3777	4e-23	236 - 295	98	59 / 60	minus
Harvest35	U35_41136	182	3e-25	6 - 65	100	60 / 60	minus

Contig Sequence (182 bp)

>U35_41136 182 Hv_44K_v2
ACACCGTGAGGGACCTTTCTATGGGATGAAGTGAAGAGTGCCGAGTGTCTTGATCTTACT
AATCAATGCATCAAATTATGTGCACAATAAGCTTTTGCTATGCTCTCACCGTTAATGTCC
ACTGGTTGGATCATGCTTCTGTTTATGAGCTCATTGAAGTAATTCTCTCGTAACTCAAAT
TG

Homology of Contig U35_41136 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None