- Probe CUST_34801_PI390587928
- Source Contig U35_41137
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34801_PI390587928 | Hv_44K_v2 | ATGCAGCTCTCATTGTATCTACCCACTTATGCTGAATTGTATTGTCATGAAACTTTTAGT | 14 | GeneList: thistle2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.366 | 0.952 | 2.526 | 1.885 | 0.703 | 0.926 |
| Raw | 26.796 | 110.187 | 241.067 | 281.858 | 36.779 | 53.546 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252755.1 | 1285 | 2e-24 | 1102 - 1161 | 100 | 60 / 60 | plus | ABC18459 ABC26738 |
| MLOC | MLOC_60487.3 | 3477 | 7e-23 | 2127 - 2186 | 98 | 59 / 60 | minus | ABC18459 ABC26738 ABC30536 |
| MLOC | MLOC_60488.7 | 5010 | 7e-23 | 2408 - 2467 | 98 | 59 / 60 | minus | ABC03926 ABC03927 ABC18459 ABC26738 ABC30536 ABC34594 ABC39256 |
| MLOC | MLOC_60488.2 | 9067 | 7e-23 | 7717 - 7776 | 98 | 59 / 60 | minus | ABC18459 ABC26738 ABC30536 ABC34594 ABC37694 |
| JLOC1 | JLOC1_39449.1 | 3777 | 4e-23 | 1177 - 1236 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC18459 | 744 | 6e-22 | 555 - 614 | 97 | 58 / 60 | plus | ABC18459 |
| Harvest35 | U35_41137 | 731 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_19386 | 732 | 6e-22 | 543 - 602 | 97 | 58 / 60 | plus |
Contig Sequence (731 bp)
>U35_41137 731 Hv_44K_v2 TTTTTTTTTTTTACACTAAAAGTTTCATGACAATACAATTCAGCATAAGTGGGTAGATAC AATGAGAGCTGCATGTCATTGCGTAAGGAAGAAAAATCAAAACAAAGACAAATGCAATGT TCTTGAATCATCCTGATTGCAAAGGACAGACAAACATGTAGAACTGAACACTCAGCATAA GCTACAATGAATCAACAATTGCAAGAGACCTGACTTGTGGCATAGCTGCTACCTGTCATG CACTTTGGGATGGATAATCTTCAAATCTTGCTTTTGGACAGACCGTTATCGCTTCAATTG AAGTGACTTTTCTTCACTTGGCAGAAACATATGGAATCAATCACCATATCATGTATACAA TAAGATTTTTCCATGCATTTACCAACATTGATGTCAATTGGTTGAATCATGCTCCTATTC ACGGTCTCATTGAGCAATTCTACCACCGAGCTCAAACTTGCTAATCCCTTGTTTTTCATG ATAAACAAAACCTCAAACTATCCACTTACATATCAAATGAGCTTGCTTAATCATCTAATC TTCTAAAAACATGCTTAGACATAATAACTAATCCTATTAGATGGGAAGGTAGATCAGAAC TACTAGGAAAAAAGGGTCGACTTCTAGATCATAACTCTTGTATAATCTACAAGTCAAGGG CCTCTTTTACTTTTTTTTCTTTGATATTTCACATAGTATTGGTGCATGTTTTATGATCTA CCTTCGCATCG
Homology of Contig U35_41137 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |