barSeed - Barley Seed Development Database

Probe CUST_347_PI415269222

Source Contig TA49195_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_347_PI415269222	Hv_44K_v2	GTGATTTGACACATTTCAACCGACCTAGTTTTGCATGGTAAATATTTTTGTTTGGTTTGG	650	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	17.520	11.748	1.712	0.322	0.737	0.656
Raw	160.162	180.057	21.565	3.928	3.098	2.899

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50357.1	1585	2e-24	1331 - 1390	100	60 / 60	plus	ABC17447
JLOC1	JLOC1_32142.1	1466	8e-25	1337 - 1396	100	60 / 60	plus
Harvest21	ABC17447	769	3e-25	651 - 710	100	60 / 60	plus	ABC17447
Harvest35	U35_23051	769	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (713 bp)

>TA49195_4513 713 Hv_44K_v2
CCGGAGATCAACCTCCGGACCGACATCGTTGAAGATCAGGTTGGCGGGCCGTCAGCATCA
CGCCGCCCCATCTTGGCCTTCTTCGCTGGCGGTGACCATGGCCCCGTTCGTCCACTGCTC
CTGCAACACTGGAAGGGCAAGGATGCAGACGTGCAGGTGAGCGAGTACCTGTCCCGGGGC
GTGTCCTACATCAACGTGATGCGGCGGAGCAAGTTCTGCCTGTGCCCCAGCGGGTACGAG
GTGGCCAGCCCGAGGGTGGTGGAGGCCATCTACTTGGAGTGCGTGCCGGTGATCATCGGC
GACGACTACGTGCTGCCCTTCAGCGACGTGCTCAACTGGCCCGCCTTCTCGGTGCGGGTC
GCCGTGGCGGACATACCCAACCTCAAGACCATCCTCGCCGGCGTGTCTCCGCGGCAGTAC
ATACGAATGCAGCGCCGGGTGAGGACCGTGCGCCGGCACTTCATGGTCAACGGCCCGCCG
CGCCGGTTCGACATCTTCCACATGATCCTGCACTCCATCTGGCTCAGGAGGCTCAACATC
AGGCTCCATGGACAAGACTGAGATATTCTTGGGTTTCCCTTCTTTTAGGGAGCGGTCTAA
CAAGCAGTCAACTGGTTTGTTTGTGTCCAGGCCAAATTTCCTGTCCAGTTGTGATTTGAC
ACATTTCAACCGACCTAGTTTTGCATGGTAAATATTTTTGTTTGGTTTGGATA

Homology of Contig TA49195_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g09050.1	607	2e-94	protein\|exostosin family protein, putative, expressed
Brachypodium v1_2	Bradi1g54950.1	549	5e-92
Arabidopsis v10	AT5G03795.1	518	1e-81	Exostosin family protein \| chr5:1007554-1010373 REVERSE LENGTH=518