- Probe CUST_3479_PI390587928
- Source Contig U35_44483
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3479_PI390587928 | Hv_44K_v2 | CGACGGAAGGAACAAGAAAATGGTAGGGATCATGCTACATCATCCAAAACGAGCAAGAAT | 275 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.643 | 1.269 | 1.110 | 0.745 | 0.492 | 0.451 |
| Raw | 418.772 | 424.709 | 388.229 | 369.859 | 92.811 | 95.178 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_38571.1 | 2310 | 3e-22 | 1486 - 1541 | 100 | 56 / 56 | minus | ABC22589 |
| JLOC1 | JLOC1_25087.1 | 1696 | 1e-22 | 1439 - 1494 | 100 | 56 / 56 | minus | |
| Harvest21 | ABC42253 | 395 | 3e-25 | 276 - 335 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17461 | 867 | 5e-23 | 534 - 589 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_44483 | 395 | 3e-25 | 276 - 335 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8609 | 868 | 5e-23 | 535 - 590 | 100 | 56 / 56 | plus |
Contig Sequence (395 bp)
>U35_44483 395 Hv_44K_v2 GGATCCCCCGGGCTGCTGTATGGCGGCACGAGGTCCAAGAGTATCCAANTCCAAATAACA GTGAAAGGAACTCCAGACAAGATAAAATAAACAAGACTCATGACAATAATCGTGTATCTA GCAGTTCTGATGCTCGCCAGGCGAGTAGGGATAAGCCCAGGGAGGGCACAAGAAAGGGCA GAGGCTCTGTGCCTTTTGAGAAAGATCTTCACAGATCTAGCAAGAGAAGACGGGAAGATC ATGAAAGCCATCGTAGTGGGAAGGTTGAGTCAAAACGACGGAAGGAACAAGAAAATGGTA GGGATCATGCTACATCATCCAAAACGAGCAAGAATACTCAACGACATGATTCATTTGTGA AACAAGGGGAAGAAGAAGCCATGTCAGATGATGAA
Homology of Contig U35_44483 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |