- Probe CUST_34765_PI390587928
- Source Contig U35_41184
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34765_PI390587928 | Hv_44K_v2 | TAAGTCAGTGATCTTAACTGCGACCGCGTGCCCGAAATTCGTTCGCGTTCTTCTAAAAAA | 11 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.087 | 0.206 | 1.209 | 2.305 | 1.336 | 0.999 |
| Raw | 107.755 | 375.036 | 2020.790 | 5785.853 | 1231.448 | 989.278 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75026.1 | 621 | 3e-22 | 410 - 465 | 100 | 56 / 56 | plus | ABC02916 |
| JLOC1 | JLOC1_50026.1 | 2429 | 1e-22 | 1251 - 1306 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_41184 | 465 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_15131 | 1672 | 6e-22 | 1619 - 1672 | 100 | 54 / 54 | plus |
Contig Sequence (465 bp)
>U35_41184 465 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGAAGAACGCGAACGAATTTCGGGCACGCGGTCGCAGTTAAGA TCACTGACTTACTCTCGGCATCCATCTTCTAGCTACTAAATCCATGATATAAGACGCTAA AAAGAAAAGCTACACAGTCGATAATGGATATGATGATGGTGTATATTCCCCCGGTTTCAT TCATTCATTCCCGGTATCCCTGCTGTTACTGTCACTCACACGTTCCTTCTCCTCCCCCCT CAACAAATCCTACATAACAAAGACGAGACACGAACGGAATGGAGATGGAGGACGACGGGA CGACTACTCGGCGCCGTCGGGTTGCTGCTGCTTCTGGTCGCCGAAGATGCGGGTGCGGAA GTCCTGGACCATGAGCGGGAGGCCGTTCCGGAGCGCCACCTTGGGCTCCCACCCGAGCAG CTCCTTGGCCTTGGTGATGTCCGGCTTGCGCTTGTGCGGGTCGTC
Homology of Contig U35_41184 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |