barSeed - Barley Seed Development Database

Probe CUST_3474_PI390587928

Source Contig U35_44490

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3474_PI390587928	Hv_44K_v2	TCTCAAGAAGGCTCTTACATGTGGGTTGCTCTGAACTATCTGTTGGATAGATTGGGAGGA	101	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59840.1	1778	2e-24	1140 - 1199	100	60 / 60	minus	ABC13623
JLOC1	JLOC1_38968.1	1777	8e-25	572 - 631	100	60 / 60	plus
Harvest21	ABC42279	292	3e-25	102 - 161	100	60 / 60	plus
Harvest35	U35_44490	292	3e-25	102 - 161	100	60 / 60	plus

Contig Sequence (292 bp)

>U35_44490 292 Hv_44K_v2
GAGATAAGCAATCGGAGCAGATCCTTGAAGCGGTCAGGGATATTGTCCACACCAAGACTA
AATTCCAGTACAACCCAAAGTGGATCAATGTTCTCAAGGGATCTCAAGAAGGCTCTTACA
TGTGGGTTGCTCTGAACTATCTGTTGGATAGATTGGGAGGAGACTACTCGAAGACGGTAG
GCGTGATCGATCTTGGAGGCGGCTCCGTCCAAATGGCGTACGCCGGCTCTCCAAACGCCG
CCGCAAACGCCCCGGCGGCACCTAATGGCATGGATCCTTACATGACCAAGGA

Homology of Contig U35_44490 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None