barSeed - Barley Seed Development Database

Probe CUST_34748_PI390587928

Source Contig U35_18804

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34748_PI390587928	Hv_44K_v2	TTGCGTGTTGACTTGACAGACCAGCAAGGATATATGTTCATGTGTTTGTGTCTTAAAAAA	1084	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.432	0.652	0.922	1.662	0.984	1.321
Raw	432.223	1037.763	1269.313	3579.407	742.345	1084.431

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_769.1	1915	3e-21	203 - 256	100	54 / 54	minus	ABC11147
JLOC1	JLOC1_464.1	1021	2e-21	74 - 127	100	54 / 54	minus
Harvest35	U35_18804	1155	3e-25	1085 - 1144	100	60 / 60	plus

Contig Sequence (1155 bp)

>U35_18804 1155 Hv_44K_v2
CTTTCCTCCTCCTCATATGGGCGTCCTTGTCCAGGCCCCTAACCTCGCCGGCGCTCGGCG
CCCGACCGCCCGCGTCCTGCGGAGCGACCGCGGCGGGCGGTTCAAGGTCACCGCCGTGGC
GTCCGCTGGCTCTGTGAAGGAGGAGGAGAAGGGGACCGGGAAGAAGGAGAATATAGTGAT
TAGAGTCTTGGACCCTGTGCGGGAGAGGAGGCTGCCGCCGCCTCTGTTCTCGGCGCCAGA
GACTACGGCAGAGTCCCTGGCGGCGATTCGGCGTCCGGAAGAGGATGGGGAAGAAAGGCG
GAGGTACTACGTGAACATGGGGTACGCCATCCGGACGCTGCGGGAGGAGCTCCCTGACGT
ATTCTGCGAGGAACCCAGCCTTGACATTTACAGAGAAGATATTGTCTTCAAAGATCCTCT
CAGTAAATTCGTGGGTATTGATAGCTATAAAAGGATATTCTGGGCGCTGCGCTTTACCGG
CCAGATTTTCTTCAAGGCCTTGTGGATTGACATTGCTACTATATGGCAACCAGTCGACAA
TGTAATTATGGTCCGGTGGATTGTTCATGGCATCCCTAGATTCGTAGAGGATGGTCATAG
TCGCTTTGATGGCACGTCAGAGTATAAGTTGGATAAGAATGGTAAGATTTACCAGCATAA
GGTGGACAATGTTGCCACGAATTCACGAAAGAAGTTCAAGATTTTGCCTGTCGAAGAGCT
CCTCAGATCACTCGGGTGCCCATCCACTCCAAAACCAACTTACTTCAAGATAATCTCACT
CATGCCGTTTTGGTTGGGATGGACATGGATGAGACAATAACTGTTGTCAGACCTTATGCT
GGCAAATTGAGCGAAATGCTGATGTTTCCAACCCGATACCCCCTAAGTTTGCCTTTCTGC
TTTTCGGCTGTATACCTACTTACCACTGAGCAGTGGCCTCGTTATAACCGCTGTATTTGT
GTACAGCTGTAAGTTTTGATTCAAAGAACACAGTTGTAGATGTTCCTCCTTATTTTGTTG
TTGTTGAGGGATATATGTTCCTCGTTTGAGATACGGAAAGCTGTATGGAAAGCTGTATTT
GACTTTGCGTGTTGACTTGACAGACCAGCAAGGATATATGTTCATGTGTTTGTGTCTTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_18804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g12474.1	301	2e-110	protein\|expressed protein
Brachypodium v1_2	Bradi2g07260.1	292	3e-95
Arabidopsis v10	AT2G46220.1	241	3e-69	Uncharacterized conserved protein (DUF2358) \| chr2:18979655-18980557 FORWARD LENGTH=241