barSeed - Barley Seed Development Database

Probe CUST_34737_PI390587928

Source Contig U35_18815

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34737_PI390587928	Hv_44K_v2	GAACCAGGGCCTTTGCAATGTATATTTCAAGCTCTTAAGGTGAAATTATCTTTGTTTTGT	1258	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.445	0.546	0.956	1.770	1.088	1.403
Raw	708.379	1366.671	2118.600	6162.023	1331.878	1862.153

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66655.1	855	2e-24	606 - 665	100	60 / 60	plus	ABC11277
MLOC	AK252253.1	1368	7e-23	1273 - 1332	98	59 / 60	plus	ABC11277
JLOC1	JLOC1_43953.1	873	8e-25	605 - 664	100	60 / 60	plus
Harvest21	ABC11277	1314	3e-25	1226 - 1285	100	60 / 60	plus	ABC11277
Harvest35	U35_18815	1368	3e-25	1259 - 1318	100	60 / 60	plus

Contig Sequence (1368 bp)

>U35_18815 1368 Hv_44K_v2
CTCTAATGCCTACAGAACTGAGTCCGCTCCAATGCCGTTGCCTCCCTCCTACTCATAAAT
TCCCCCTCCCCCATCCCCCCTCCGGGAAACCAAACCCTAGCGCTCCTCAATCGCACATAG
CACCCCGGAAATCCGCCCAGCTCTAGCCAGATTTGGCTTTGCGCGGACCAATTCGCCACC
CAATAAATCCGGGGGTGTGTCCCCTTGGGCATGGTCGCTTGATCGCGTCCGGCCCATGGG
AATGTCGGGGGCCGCCAGTGGCGGTGCCGGATGCGGACGCGGCGAGTACATGAGTATCCC
GGAGGATGTGGACGCGATCAAGGAGGCGGTAAAGGAGGAGGGGGAGTGCCCAAGGCTGCT
GCGATGCCGCGCGATCCGGTGGTGGGCGAAGGTCGCCGTACTCGGGATCTTCCTCGCCGG
CGCCACCGCGGCCGCCGTCGTTTTCTTGGGCCCACTCGTCATCAAGAAGGTGGTTGTGCC
GATTATTGACTGGCAATCAAGAACATTCAGCCGACCAGTTATTCTTCTAATATGTTTTGG
TGCAATCGCTTTTTTCCCAAGTGTCTTGATACCTTCTTCTCCCTTTATGTGGATTGCGGG
GATGACCTTTGGATATGGTTATGGCTTTCTGATAATTACAACGGCGATGAGCATAGGCAT
GTCATTACCATTTTGTATAGGATCTGCGTTCCATTCCAGAATACACAGATGGTTGGAAAA
ATGGCCGAAGAAAGCAGCTTTTGTTAGACTTGCTGGTGAAGGAGATTGGTTCCATCAGTT
TAGGGCAGTTGCTTTACTTAGGATTTCCCCGTTTCCATATATAGTTTTTAACTACGCTTC
CGTGGCTACAAATGTCCAATATTGTCCATATATAGCTGGTTCAATGGCGGGAACCATACA
TGAAACCCTCCTTGCAATCTATAGTGGGAAGCTCGTTCAAAGCTTGGCTGTGGCAACGAG
CCAAGGGTCTTTCTTATCAGTGGATCAGATCATCTACAATGGAATTGGCTTTACGGTTGC
TGCAGTTTCCACTGCTGCAATAACTATTTATGCGAAAAAGGCGCTCCAAAAATTGCAGGC
TGAGGATGAGCTATGTTGAGATCTCCGAATCAAATCTTTGATGCTAGGTCCCCTCCAGGT
GTAAACTACAGACAGGGACTACTAATCTGGTTTCAAGCGTCAACAACCTGCAACCGCTTT
TGGTTTTGTTTCAAGTAGACAGAGAACTGCCAAATTTAAGAACGTCAATCAATGTATTGA
ACCAGGGCCTTTGCAATGTATATTTCAAGCTCTTAAGGTGAAATTATCTTTGTTTTGTTT
ATTGAAGAAAAATACGACCACCATTTTATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18815 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g28440.1	289	7e-146	protein\|SNARE associated Golgi protein, putative, expressed
Brachypodium v1_2	Bradi1g28390.1	290	1e-161
Arabidopsis v10	AT4G22850.1	296	2e-71	SNARE associated Golgi protein family \| chr4:11994194-11995941 FORWARD LENGTH=296