barSeed - Barley Seed Development Database

Probe CUST_34714_PI390587928

Source Contig U35_18838

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34714_PI390587928	Hv_44K_v2	TAAAAATCTCGCTTTATTGATGCTAAAAATCTATCATGCCCTGCTGCTTTGCGTTCAAAA	1113	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.260	1.497	1.154	0.793	0.265	0.250
Raw	582.982	1077.637	731.764	810.435	92.632	95.529

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10214	1846	1e-23	1114 - 1170	100	57 / 57	plus
Harvest35	U35_18838	1186	3e-25	1114 - 1173	100	60 / 60	plus

Contig Sequence (1186 bp)

>U35_18838 1186 Hv_44K_v2
CGGAACTTAAATTCATTAGCAAAGATAATGAGAAATCGGCGTTGCGAAAGAGGGGCTCTG
ACTCTTGCTTCAGCAGAAGTCAAATTCGAAATTGACAGTGAAACTCATGATCCCCTTGAC
ATAGGAATATATCAAATTCGTGAGGCAAACCAAATGATTGAAGAGTTTATGTTGGCAGCA
AATGTTTCTGTTGCTGAGAAGATTTTGCAGCACTACCCCTTGTGTTCATTGCTACGGCGT
CATCCTAGCCCAACAAAGGAGATGCTTGAGCCATTACTCCGTACTGCCTCCTCTGTTGGC
CTAAGTCTGGACGTATCATCCTCAAAAGCATTAGCTGAATCACTTGATAATGCGAAGAGA
GATGACCCGTACTTCAACAAGCTTATCCGGATTTTGGCAACTAGATGCATGACACAAGCA
GTTTACTTTTGCAGTGGAGATTTGAGCTTGTCTGAGTATTACCATTATGGGCTTGCATCT
GCTCTGTACACTCATTTCACTTCTCCTATTCGCAGATATGCAGATGTTGTGGTGCATAGG
TTGCTAGCTGCTGCTCTAGATATTGCGAAACTTCCACCAGTCTTCCAGGATGGTCCACAA
CTCACAGGCATCGCTGACAACTTGAATTATAGGCACCGAAATGCCCAAATGGCAAGCAGA
GCATCGGTTGAGCTCCACACTCTCATATATTTCAGGACAAGGCCTGTGGATACTGAAGCT
AGAATAGTAAAGATCAAGGCAAATGGTTTCATAGTCTTTGTACCGAAGTTTGGCATAGAA
GGTCCCATCTATCTTACGGCGAAGGGAGACAAAGGGGCTGACTGGGTAGTAGACGAGGTG
CACCAGAAAGTAACCAAGCCCGGAACAAACATAAGCTATGCTGTGTTGCAGAGTGTTATG
ATCCATATGGAAGTGGTCGAGCCTCAGCCCCACCGCCCCAAGCTACAGCTCACCCTCATA
TGAACAACAAATGTACAATTGAATTGTAACATTAGTGCATTCACCCTTTTTTCCGCTACG
ACATTGTACCAGGGTCCATTCTTCAATTCAACAATTTTTGGTGATTTTATGATATTGTCA
AGTCAGCCTGGAATTCCTCTTTACAGAGATGTGTAAAAATCTCGCTTTATTGATGCTAAA
AATCTATCATGCCCTGCTGCTTTGCGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g03710.1	920	0.0	protein\|ribonuclease protein, putative, expressed
Brachypodium v1_2	Bradi1g76480.1	936	0.0
Arabidopsis v10	AT2G17510.2	1012	1e-161	\| Symbols: EMB2763 \| ribonuclease II family protein \| chr2:7609395-7616242 REVERSE LENGTH=1012