barSeed - Barley Seed Development Database

Probe CUST_34711_PI390587928

Source Contig U35_13837

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34711_PI390587928	Hv_44K_v2	TCCAGCGTGCATATGTATGTAAATTATTATTAAGAAGGGACGACGATCGAATTAATTGAC	1224	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38500.1	679	2e-24	15 - 74	100	60 / 60	minus	ABC01219 ABC01226 ABC01228 ABC01239 ABC49778
JLOC1	JLOC1_25041.1	675	8e-25	497 - 556	100	60 / 60	plus
Harvest21	ABC01226	1937	1e-23	1210 - 1270	98	60 / 61	plus	ABC01226
Harvest35	U35_48264	417	3e-25	19 - 78	100	60 / 60	minus
Harvest35	U35_13837	1328	3e-25	1225 - 1284	100	60 / 60	plus

Contig Sequence (1328 bp)

>U35_13837 1328 Hv_44K_v2
ATGAATCTCTATCTCTCACACCCACACCCATCTTCTCCTCCTAACAACCGAGCCAGGCTC
AAGCGGCGGCGATGGAGGGCAAGGAGGAGGACGTGCGCCTGGGCGCGAACCGCTACTCGG
AGCACCAGCCCATCGGCACGGCGGCGCAGGGCGGCGGAGCCGACGAGAAGGACTACAAGG
AGCCGCCCCCGGCCCCCTTCTTCGAGGCCGGGGAGCTCACCTCCTGGTCCTTCTACCGGG
CCGGCATCGCCGAGTTCCTGGCCACCTTCCTCTTCCTCTACATCTCGGTGCTCACCGTGA
TGGGCGTGGTCGGCAACCCGTCGGGGTCCAAGTGCGGCACCGTGGGCATCCAGGGCATCG
CGTGGAGCTTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCG
GCCACATCAACCCGGCGGTCACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCGCTCACCA
GGGCCGTCTTCTACATCGTGATGCAGTGCCTCGGGGCCATATGCGGCGCCGGCGTGGTGA
AGGGGTTCCAGACCACGCTGTACCAGGGCAACGGCGGCGGCGCCAACTCCGTCGCTGCCG
GGTACACCAAGGGGGATGGGTTGGGCGCCGAGATCGTCGGCACGTTCGTGCTGGTGTACA
CCGTCTTCTCCGCCACCGACGCCAAGCGCAGCGCCAGAGACTCCCACGTCCCCATTTTGG
CGCCGCTTCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCCCCATCACGG
GCACCGGCATCAACCCGGCGAGGTCCCTCGGCGCCGCCATCATCTACAACAAGAAGCAGG
CGTGGGACGACCACTGGATCTTCTGGGTGGGACCGTTCATCGGCGCGGCGCTGGCGGCGA
TCTACCACGTGGTGGTGATCAGGGCGATCCCCTTCAAGAGCCGCGGCTAGTGGACCAATC
AGTCTGGGCGGCCATGGATGGAATCTTATCGCTGTTCATCGTCGACCGATCATGTGGTGG
TGGTGGTGGTTGCTGGTGCGCGCGTACGTGGATCGTGTCTCGGCCGCGCACGCTGTAATA
GTTCTCAAATCTGCCGTCTCTCCTCGGTGTGTGTGCCTGCCGGCAGCGTCGCCTGTTCAA
GTCTGCGAGTTTCAGTCAGTATAGTACCTGCTGTACTACTTTCCCTACCTTTTGCATTGT
ACCAGTACCACGCACGCCATTTAATCCAGCGTGCATATGTATGTAAATTATTATTAAGAA
GGGACGACGATCGAATTAATTGACAAAAAAAAAAAAAAAAAAAATTCCTCCTAAAAAAAA
AAAAAAAA

Homology of Contig U35_13837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44630.2	290	9e-169	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g56020.1	290	7e-175
Arabidopsis v10	AT1G01620.1	286	9e-161	\| Symbols: PIP1C, TMP-B, PIP1;3 \| plasma membrane intrinsic protein 1C \| chr1:225986-227176 REVERSE LENGTH=286