- Probe CUST_3470_PI390587928
- Source Contig U35_44494
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_3470_PI390587928 | Hv_44K_v2 | ATCCTGTACAAGGATGTCAAGTCCTGCGAGGACGAAGACGTGCACGTCCTCTGGTCCATC | 138 | GeneList: midnightblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.109 | 0.091 | 0.296 | 2.386 | 2.733 | 4.085 |
Raw | 2.892 | 2.580 | 18.255 | 265.518 | 96.324 | 157.750 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_79669.1 | 757 | 2e-24 | 429 - 488 | 100 | 60 / 60 | plus | ABC25506 |
JLOC1 | JLOC1_53050.1 | 837 | 8e-25 | 302 - 361 | 100 | 60 / 60 | plus | |
Harvest21 | ABC42284 | 214 | 3e-25 | 139 - 198 | 100 | 60 / 60 | plus | |
Harvest35 | U35_44494 | 214 | 3e-25 | 139 - 198 | 100 | 60 / 60 | plus |
Contig Sequence (214 bp)
>U35_44494 214 Hv_44K_v2 CTCACCCACACCCCTGAGGCCTAACCCTCTGGCTCTCATCAAGGCTTCCTCATGGGGTGG CTCCGCTCCCTCTTCTCCCCCCTGAGGAAGATCATGGTGCGCGCGCATTCGGCGCGCAAA TACCGGAGGGGGATGAGGATCCTGTACAAGGATGTCAAGTCCTGCGAGGACGAAGACGTG CACGTCCTCTGGTCCATCCTGGTCGACTCGCACC
Homology of Contig U35_44494 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |