barSeed - Barley Seed Development Database

Probe CUST_34708_PI390587928

Source Contig U35_25811

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34708_PI390587928	Hv_44K_v2	GAAAGGTTTGAGTCTGGCACAGTGGACTTCAAAGGCACAGACTTTGAATACATACCTTTT	424	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70425.1	1673	2e-24	326 - 385	100	60 / 60	minus	ABC12521
JLOC1	JLOC1_46734.1	1696	8e-25	1288 - 1347	100	60 / 60	plus
Harvest21	ABC25815	523	3e-25	425 - 484	100	60 / 60	plus
Harvest35	U35_25811	524	3e-25	425 - 484	100	60 / 60	plus

Contig Sequence (524 bp)

>U35_25811 524 Hv_44K_v2
GCTCTTGAGGATCCGCAAGGAAGGTGGCCTCGACGTGCCTCTTACCATGGGAATGGTCAA
AGGAGTTATACTTGATTTATTTGGTGCCGGGAGCGAGACATCAGCTACCACGCTTCAATG
GGCCATGTCGGAGCTCATGAGGAACCCAAATGTGATGCGGAAAGCACAAGCTGAAGTACG
CGACAACCTTCAAAATAAACCTAAAGTGACCGAGGATGACTTAGTGAATCTCAAGTACCT
AAAACTGGTCATCAAGGAGACAATGAGGTTGCATCCAGCCGCACCATTGCTTCTCCCTAG
GGAGGCCAGGGAGCCTTGCAAAATCCTCGGATATGATGTACCCAAAGGTACAACGGTCTT
GGTGAATGCGTGGGCGATTGGCAGAGATCCAAAGCACTGGAAAGACCCTGAGGATTTCAA
ACCAGAAAGGTTTGAGTCTGGCACAGTGGACTTCAAAGGCACAGACTTTGAATACATACC
TTTTGGGGCGGGTCGGAGGATGTGCCCTGGAATGACATTTGCTC

Homology of Contig U35_25811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09200.1	520	1e-85	protein\|cytochrome P450 71D10, putative, expressed
Brachypodium v1_2	Bradi3g06240.1	511	2e-91
Arabidopsis v10	AT3G26230.1	498	2e-51	\| Symbols: CYP71B24 \| cytochrome P450, family 71, subfamily B, polypeptide 24 \| chr3:9598200-9599892 REVERSE LENGTH=498