barSeed - Barley Seed Development Database

Probe CUST_34707_PI390587928

Source Contig U35_25812

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34707_PI390587928	Hv_44K_v2	AACCGATCAGCTAGCACCCATGGCTCAGATGCTCTCCGCCATGACTATGATGGACACCGT	61	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362753	1985	2e-24	60 - 119	100	60 / 60	plus	ABC09863
MLOC	MLOC_14893.1	835	2e-24	550 - 609	100	60 / 60	minus	None
JLOC1	JLOC1_10178.1	837	8e-25	552 - 611	100	60 / 60	minus
Harvest35	U35_25812	615	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_25812 615 Hv_44K_v2
AGCACAAGGCAGCACTGCCCAAACCACCTCCTTGGCCTCTACTGCGCAACGCGCCATTAG
CAACCGATCAGCTAGCACCCATGGCTCAGATGCTCTCCGCCATGACTATGATGGACACCG
TCCCCACCGCCCCCGCCATTATGCCCAACCAGGCCATCTGCCTGGACGCGCCCATGTCGG
GCTCGGGCATCACCGTCGTGTCGAGGCAGGCCGTGCTCCCTGACGGCCCGCCGTCGGCGA
TCGGGGACCTCACGCTCTCCGTCTCCGACCTGCCCATGCTGTCGTGCCACTACATCCAGA
AGGGCCTCTTCTTCCCCGCCCCCGACGTCCCCATGGCCTCCCTCGTCTCGCTGCTCGTGT
CGTCGCTCTCCCGCGCGCTCGCCATCTTCCCGGCCCTCGCCGGCCGCTTCGTCACCCTCC
CCGACGACCGCATCGTCATCCGCTGCAACGACGCCGGCGTCGACTTCCATCACGCCGTGG
CGCCAGCCCTGTCGCTCAACGACTTCCTCCTGCCCAACGCCGACGTCCCGACCAGGCTGA
CCAAGGACCTGTTCCCCATGGACCGCACCGTGAGCTACGAGGGCCACCGCCGCCCTCTCA
CGTCGTTCCAGCTTA

Homology of Contig U35_25812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63480.1	484	5e-75	protein\|transferase family protein, putative, expressed
Brachypodium v1_2	Bradi2g55250.1	498	2e-81
Arabidopsis v10	None