- Probe CUST_34705_PI390587928
- Source Contig U35_25815
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_34705_PI390587928 | Hv_44K_v2 | AGACAGGACTTTGGTTAACATGGTTCCACACACACCCTTATAAATAGTAAATGAAAAACA | 281 | GeneList: brown MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 3.847 | 4.865 | 1.824 | 0.641 | 0.496 | 0.442 |
Raw | 54.985 | 102.827 | 34.144 | 18.793 | 3.466 | 3.551 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC25814 | 389 | 3e-25 | 282 - 341 | 100 | 60 / 60 | plus | ABC25814 |
Harvest35 | U35_25815 | 389 | 3e-25 | 282 - 341 | 100 | 60 / 60 | plus |
Contig Sequence (389 bp)
>U35_25815 389 Hv_44K_v2 CTTTCCTACGCTACCCAGCCTACCCCCATGCCCCTTCTGATGAAATCTGGTGAATGATTT GTCCTGTGCCACTCGGTGAACTGCTTACCATACTCTACAACATATTAATCTCCGAGGACT CTGGTTTGACCTCATCTTTTGTCTAGTAAATGGTAGCTAGCTAGTTAGCTGGAGCTAGAC CAAAACATCCTGTGTCGAGATGTGGTACAAACACTAATGGTGTTTCAAACTATCAGAAAT ATGTGGCACTTCTTACTTATTTTTGTAGGAACACTCTTGTTAGACAGGACTTTGGTTAAC ATGGTTCCACACACACCCTTATAAATAGTAAATGAAAAACAAATGCACGAAAAATATGAT TTTTTTGGTAACAAAAAAAAAAAAAAAAA
Homology of Contig U35_25815 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |