barSeed - Barley Seed Development Database

Probe CUST_346_PI415269222

Source Contig TA44535_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_346_PI415269222	Hv_44K_v2	ATGTTCCTATTCTGTTGGAGGTAGACCTGGAAGGTACTCTCCCCCTTTAGGTATGTCAAT	569	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.277	0.475	1.298	2.360	1.069	1.410
Raw	17.939	46.523	114.133	330.086	54.014	77.169

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (685 bp)

>TA44535_4513 685 Hv_44K_v2
CGGCACGAGGGATTAAGATACATGCAGAAGATCCGGATATTTTCTCTCTCTCGTGTCATG
TCATCCCTCCTTTCTTTCTGAAAACCCTAGCGCCGCAGCACGAGAGAGCCGTCCTTAGGT
TTCCGCCCAAGGTGTTGGGGAATTTTCGGCTCGATTGGATTGAAGATGACGGAGAAGGAG
GTGGGACGGATCTTCGTGGGCGGACTCTCCTGGGACACCACGGAGCGCACTCTGGAGCGA
GCTTTCGGCGAGTTCGGCAAGGTCATCGAGACGCAGGTTGTAACAGAAAGAGACACAGGC
CGCTCCCGTGGGTTTGGGTTTGTTACATTCTCGGAACCTCGGGCTGTGGATGTTGCGATC
CGGGAAATGCACAATGGAGAACTAGATGGTCGGACCATTTCTGTGAACAAAGCTCAACCT
AGAGTGAACAGTAATGATGGTGGCTATGGATATGGGGGTAGTAGTTACTCATCTGGAGCT
AGAGGTGGATATCGTGGTGCAGCTGACATAGTACCCGCTGCAAGTGATGATTGCTTTAAG
TGTGGACGCCCTGGACACTGTGCTCGTGAATGTTCCTATTCTGTTGGAGGTAGACCTGGA
AGGTACTCTCCCCCTTTAGGTATGTCAATGGCGCTTGTGGGCCTTGGGACCGCTTTGGAG
GATCGCACCGTTTTGCTTATCGCTT

Homology of Contig TA44535_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g08960.1	309	6e-67	protein\|RNA recognition motif containing protein, expressed
Brachypodium v1_2	Bradi1g55020.1	295	2e-76
Arabidopsis v10	None