barSeed - Barley Seed Development Database

Probe CUST_346_PI390587928

Source Contig U35_9381

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_346_PI390587928	Hv_44K_v2	AATTGTCCGTGGAATCATTGATGCTGTCGCCAAGGTTCCTGGAACATCTGATCTTCAGAT	393	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358799	1756	2e-24	594 - 653	100	60 / 60	plus	ABC06469 ABC11573 ABC18800
MLOC	MLOC_59887.1	1486	2e-24	1097 - 1156	100	60 / 60	minus	ABC06469 ABC11573 ABC18800
JLOC1	JLOC1_39006.1	1835	8e-25	494 - 553	100	60 / 60	plus
Harvest21	ABC20163	627	3e-25	394 - 453	100	60 / 60	plus
Harvest35	U35_9381	627	3e-25	394 - 453	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_9381 627 Hv_44K_v2
ACCTCCCACCCCTGCTCTCAGGTCTGACCCCTCCGCTTCACGCCCGCGCCGCCATCGCCA
TCGCCGTCCCCGTTCTCCCTCGCGTCGCGCCTCCGCCGGCCCTGCAGTTTAGGGTGGGGT
CATGTCTTCTGCAATGGAGTCATCGTACCTTCCTGCTACTAACGAGTCAATTGCAAAAGC
TCAGGAGGCTAAGGATGCTTCAGAGTCAATTTCGATCCTTTACCGTGTGATCCAAGACCC
ATCTTCTTCTGCAGATGCACTGAGAGCAAAAGAGCTTGCGATTACCAACCTTACAAACTA
CCTCACTGAAGAGAACCGTGCTGAGGATCTGCGAAATCTCTTGACCCAGCTGAGGCCGTT
TTTCTCACTGATTCCCAAGGCCAAGACTGCAAAAATTGTCCGTGGAATCATTGATGCTGT
CGCCAAGGTTCCTGGAACATCTGATCTTCAGATCTCGCTCTGCAAGGAGATGGTGGAATG
GACACGTGCAGAGAAACGTACGTTCCTCAGGCAGCGTGTGGAGGCAAGGTTAGCGGCCCT
TCTTTTGGAGAATCAGGAGTACACTGAAGCCCTGACCCTCCTTACTGGACTTATCAAGGA
AGTCAGGAGACTTGATGACAAGTTACT

Homology of Contig U35_9381 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g36700.1	426	4e-85	protein\|proteasome subunit, putative, expressed
Brachypodium v1_2	Bradi5g11170.1	427	1e-86
Arabidopsis v10	AT1G29150.1	419	2e-60	\| Symbols: ATS9, RPN6 \| non-ATPase subunit 9 \| chr1:10181240-10182499 FORWARD LENGTH=419