barSeed - Barley Seed Development Database

Probe CUST_34699_PI390587928

Source Contig U35_13841

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34699_PI390587928	Hv_44K_v2	ATCCTCGTCGCCTCAACTGAACAAAAGGCCAAGAAGGAAGAGAAGAAAGCAGGCGTAGAG	95	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.147	1.567	0.787	0.440	0.958	0.993
Raw	24.468	17.351	7.592	4.128	3.153	4.127

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19536.1	506	2e-24	103 - 162	100	60 / 60	minus	ABC01023
JLOC1	JLOC1_13536.2	500	8e-25	336 - 395	100	60 / 60	plus
Harvest21	ABC52368	394	3e-25	96 - 155	100	60 / 60	plus
Harvest21	ABC01026	1094	3e-25	211 - 270	100	60 / 60	plus
Harvest21	ABC01023	1513	3e-25	80 - 139	100	60 / 60	plus	ABC01023
Harvest21	ABC01061	634	8e-21	84 - 146	95	60 / 63	plus
Harvest35	U35_50287	394	3e-25	96 - 155	100	60 / 60	plus
Harvest35	U35_13841	613	3e-25	96 - 155	100	60 / 60	plus
Harvest35	U35_41698	617	8e-21	67 - 129	95	60 / 63	plus

Contig Sequence (613 bp)

>U35_13841 613 Hv_44K_v2
ATCCATCACACTAGCCACTAGAAGCACTGAGGAAGAGGGTGTCAAGCATGGCGTCCAAGG
GTCTTCTTGTGTTTGCTCTCCTGCTTGCTGCTGCTATCCTCGTCGCCTCAACTGAACAAA
AGGCCAAGAAGGAAGAGAAGAAAGCAGGCGTAGAGGGCTATGGCGGCGGCGGCGGCTACC
CTGGAGGAGGCGGGGGAGGCTACCCAGGCCACGGTGGAGGAGGAGGCGGCGGCTACCCGG
GCCACGGTGGAGGCGGCGGCGGCGGCTACCCAGGACACGGTGGAGGAGGCGGGGGCGGCT
ACCCGGGCCACGGTGGAGGAGGAGGAGGCGGCTACCCGGGCCACGGTGGAGGAGGCGGCG
GCGGCTACCCCGGCCACGGTGGAGGAGGCGGCGGCGGCTACCCGGGCCACGGTGGAGGAG
GCGGCGGCGGCTACCCGGGTCACGGTGGAGGAGGTGGCGGCGGCTACCCGGGACACGGTG
GTAAAGGCGGTGGCGGCTACCCCGGACACGGCGGAGGCGGCGGTGGTGGCTACCCCGGAC
ACGGCGGAAGCAGCAGTGGATGTCACTGGGGCTGCTGCGGTCACGGGTACAATGGCTGCC
GCTGCTGTGCGCG

Homology of Contig U35_13841 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None