barSeed - Barley Seed Development Database

Probe CUST_34695_PI390587928

Source Contig U35_13845

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34695_PI390587928	Hv_44K_v2	CGGTAAAAATGATGTAAAATGTGTTTGGGTTATAAAGGGCTATGTGCCCATATAAGGAAT	1131	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38014.1	947	2e-24	309 - 368	100	60 / 60	plus	ABC01219
JLOC1	JLOC1_24677.1	598	8e-25	303 - 362	100	60 / 60	plus
Harvest21	ABC01219	1230	3e-25	1091 - 1150	100	60 / 60	plus	ABC01219
Harvest35	U35_13845	1274	3e-25	1132 - 1191	100	60 / 60	plus

Contig Sequence (1274 bp)

>U35_13845 1274 Hv_44K_v2
TCGAGCACTGTTGGCCTGGATCTCTCCCACACACCCATCATCTCCTCCACCTCTCAACAA
ATCCAAGCCAGGCCAAGCAAAGCTCGGCGAAGCGCCGGCAGCAATGGAGGGCAAGGAGGA
GGACGTGCGCCTTGGCGCGAACCGCTACTCGGAGCGCCAGCCGATCGGCACGGCGGCGCA
GGGCGGCGGCGCCGACGAAAAGGACTACAAGGAGCCGCCCCCGGCGCCGCTCTTCGAGGC
GGAGGAGCTCTCCTCCTGGTCCTTCTACCGGGCAGGGATCGCCGAGTTCCTGGCCACCTT
CCTCTTCCTCTACATCTCGGTGCTCACCGTGATGGGCGTGGTGGGCAACCCGTCGGGGTC
CAAGTGCGGCACCGTGGGCATCCAGGGCATCGCGTGGAGCTTCGGCGGCATGATCTTCGT
GCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCGGTCACCTTCGG
GCTGTTCTTGGCCAGGAAGCTGTCGCTCACCAGGGCCGTCTTCTACATCGTGATGCAGTG
CCTCGGGGCCATATGCGGCGCCGGCGTGGTGAAGGGGTTCCAGACCACGCTGTACCAGGG
CAACGGCGGCGGCGCCAACTCCGTCGCTGCCGGGTACACCAAGGGGGATGGGTTGGGCGC
CGAGATCGTCGGCACGTTCGTGCTGGTGTACACCGTCTTCTCCGCAACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCATTTTGGCGCCGCTTCCGATCGGGTTCGCGGTGTT
CCTGGTGCACCTGGCGACGATCCCCATCACGGGCACCGGCATCAACCCGGCGAGGTCCCT
CGGCGCCGCCATCATCTACAACAAGAAGCAGGCGTGGGACGACCACTGGATCTTCTGGGT
GGGTCCGTTCATCGGCGCGGCGCTGGCGGCCATATACCACGTGGTGGTGATCAGGGCAAT
CCCCTTCAAGAGCCGCGACTAGTCGACAAATCAATCTGCCGACTGTGGATGGAGTCTTCT
TATTTTTGTTGTATTTTCTCCTTGCTCTTGAAATGTATGTTTCATCATATAGCTTATTTT
CTAGTTTTGAATGCTTTCCGGTCACGGTTTTTGGTGCAAATTTGTAAAGCACGGTAAAAA
TGATGTAAAATGTGTTTGGGTTATAAAGGGCTATGTGCCCATATAAGGAATAATTCCTAA
AAAAAAAAAAAAAAAAAAAAATGTGGGGTTTTACAACATATTGAGAAATTTAGTACCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_13845 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57720.1	289	2e-167	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g56020.1	290	7e-175
Arabidopsis v10	AT1G01620.1	286	2e-159	\| Symbols: PIP1C, TMP-B, PIP1;3 \| plasma membrane intrinsic protein 1C \| chr1:225986-227176 REVERSE LENGTH=286