barSeed - Barley Seed Development Database

Probe CUST_34692_PI390587928

Source Contig U35_13848

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34692_PI390587928	Hv_44K_v2	ATGTAATGCATCATTTACGTTTGACGATAAATTGGCCACGAGGATGTATTTGCTGGTAAA	926	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.449	1.677	1.191	0.895	0.644	0.914
Raw	82.562	91.505	55.348	62.589	16.729	25.165

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6806.1	1251	1e-23	1006 - 1063	100	58 / 58	plus
Harvest21	ABC02775	994	3e-25	906 - 965	100	60 / 60	plus	ABC02775
Harvest35	U35_13848	1015	3e-25	927 - 986	100	60 / 60	plus

Contig Sequence (1015 bp)

>U35_13848 1015 Hv_44K_v2
CCTAGCACCCGTCCCGCCGCCGCCGCTGCCGCCTCGACCCTCGCCGCTGCTGCATCCACC
ACCGCGGAACCATGGGTATCGACCTCGTCGCCGGCGGCCGCAACAAGAGGACCAAGCGCA
CGGCGCCCAAGTCGGACGATGTGTACCTCAAGCTGCTCGTCAAGCTCTACCGCTTCCTGG
TGCGGAGGACCAAGAGCCAGTTCAACGCCGTGATCCTGAAGCGGCTCTTCATGAGCAAGA
CAAACCGGCCGCCGCTCTCGATGCGCCGCCTCGTCAGGTTCATGGATGGGAAGGCGGACA
AGATCGCTGTGATCGTGGGCACCATCACCGATGACCAGAGGGTCTACGAGATACCGGCAA
TGAAGGTGGCCGCGCTCAGGTTCACCGAGACGGCGAGGGCCAGGATTGTCAACGCTGGTG
GCGAGTGCCTTACCTTTGACCAGCTCGCCCTCCGTGCTCCGCTTGGACAGAACACGCTTC
TCCTGAGGGGTCCCAAGAACGCCAGGGAAGCTGTTAGGCACTTTGGCAAAGCTCCAGGAG
TGCCACACAGCCACACCAAGCCATATGTCCGCTCCAAGGGCAGGAAATTCGAGAAGGCAA
GAGGAAGGAGGAACAGCAGGGGCTTCAAGGTTTAAGCTGTGGAATTTTGGGCACCCTCGT
GTCGTATTTTGCTGTTATCGGTTTATTATCATCACCTTTTTGGGTACCAGAATCATACCG
CTTTAGATGTCAGTGTCCTGTGTCAATGAGTTCTCAGAACCAGTTAATTCGTGTTTCGTT
GTTTTGCAACTTGAGACCATGCTTGCAAGCCAGTTATGAATATCATTTCTAGCACCAAAA
AAAAAAAAAAAAAAATTTCTCTCTGTTTGGCAGTGAGGTTTGTGTTCTGCCGCTTGTGCT
CATTATTGCGATGTTATAGTTTTCAAATGTAATGCATCATTTACGTTTGACGATAAATTG
GCCACGAGGATGTATTTGCTGGTAAAAAAAAACCAAAGCCGCGACAACCCCCTCA

Homology of Contig U35_13848 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47780.2	188	2e-119	protein\|60S ribosomal protein L18-3, putative, expressed
Brachypodium v1_2	Bradi1g17970.1	188	4e-124
Arabidopsis v10	AT3G05590.1	187	1e-107	\| Symbols: RPL18 \| ribosomal protein L18 \| chr3:1621511-1622775 FORWARD LENGTH=187