- Probe CUST_34676_PI390587928
- Source Contig U35_37808
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34676_PI390587928 | Hv_44K_v2 | CCTCAATCCTTGTGCTGTTTTGAGGATTGTAAAAGAATGTTTATTTGTATCCAATGAGCT | 59 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.211 | 0.301 | 1.309 | 1.992 | 1.047 | 1.124 |
| Raw | 1187.825 | 2694.543 | 10237.870 | 23200.543 | 4458.410 | 5238.497 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63077.3 | 1671 | 2e-24 | 1606 - 1665 | 100 | 60 / 60 | plus | ABC02148 ABC47512 ABC49823 |
| MLOC | MLOC_63077.2 | 1925 | 2e-24 | 1845 - 1904 | 100 | 60 / 60 | plus | ABC02148 ABC47512 ABC49823 |
| MLOC | MLOC_63077.1 | 2750 | 2e-24 | 25 - 84 | 100 | 60 / 60 | minus | ABC02148 ABC47512 ABC49823 |
| JLOC1 | JLOC1_41310.2 | 2180 | 8e-25 | 1865 - 1924 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41310.1 | 2171 | 8e-25 | 1856 - 1915 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49823 | 643 | 3e-25 | 141 - 200 | 100 | 60 / 60 | minus | ABC49823 |
| Harvest21 | ABC47512 | 319 | 3e-25 | 39 - 98 | 100 | 60 / 60 | minus | ABC47512 |
| Harvest21 | ABC02145 | 1770 | 3e-25 | 1658 - 1717 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37808 | 563 | 3e-25 | 60 - 119 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_35818 | 743 | 3e-25 | 545 - 604 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_51 | 1999 | 3e-25 | 1690 - 1749 | 100 | 60 / 60 | plus |
Contig Sequence (563 bp)
>U35_37808 563 Hv_44K_v2 TTTTTTTTTTTTTTTTTATTTTAGGAAAGGGAAAAAGTGGGAACAATCAAATTGCTATAA GCTCATTGGATACAAATAAACATTCTTTTACAATCCTCAAAACAGCACAAGGATTGAGGA ACATGTATGATCTACAGACGGCAGTGCAAAAACGAAAAACTCGAAGCAAAGATACCAACA CAACCCAATTTTATGCCTGACTGAAAATGCCGCGCCTCCGCAAAAGTTTGTAAAATTTCC TGCAGCTCCTGTGGAAAGGAACTAGGCGATCGCGGGCATGTCCTTGAGCCACGCATCGAG CGGCTTGCCGATGGAGTAAACAATGAAGCCAATCTCCCTGCCACCGCCGGCGCCGCCGCC ATGGTCATGCCCACCGCCTCCCACAAGGGGAGCTCCGGCGGGTTCGAAATGGCCGGCGGG GAAACCGGCGGCTGCAACTGCGCCACCTGCAAGTGCGGCACCGCGTGCGGCTGCTCCTGC TGCAGCTGCAAGTGAGCCGGCGCCCGGGAGGCCGGCCGGCAGAGGCGACCACGAGGATGA GAGGAGGACAAGCAACACCAACC
Homology of Contig U35_37808 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |