barSeed - Barley Seed Development Database

Probe CUST_34670_PI390587928

Source Contig U35_13855

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34670_PI390587928	Hv_44K_v2	AAACGAACAGTGGGAACCTTTGCTGCACCTCATTCAATAAATCATGATGATAGTAAAAAA	1407	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364303	3879	9e-22	707 - 761	100	55 / 55	minus	ABC02993 ABC02994 ABC06705 ABC30147 ABC30248
MLOC	MLOC_62551.1	1848	9e-22	1480 - 1534	100	55 / 55	plus	ABC06705
JLOC1	JLOC1_40939.1	1908	5e-22	1470 - 1524	100	55 / 55	plus
Harvest21	ABC06705	1718	2e-22	1390 - 1444	100	55 / 55	plus	ABC06705
Harvest35	U35_13855	1727	3e-25	1408 - 1467	100	60 / 60	plus
Harvest35	U35_37562	450	2e-22	122 - 176	100	55 / 55	plus

Contig Sequence (1727 bp)

>U35_13855 1727 Hv_44K_v2
GGGATACTCCCCACAGATTCACATCGCAAAACCAGAAGAAAAAAATAAATAGAAAGCAGC
AATGGAGTCGCTGACTCTGCGCGCCTCGCCGTCGACCGCCTCGCCGCTGCTCCGGCTGCC
GGGCCGGAGGCGTGCGGCGTCCGTCCGCGTCTCCGCCTCCGCCTCCTCCGGCGCCGGCGA
GCCGGACCTCTCCGTGACCGTGAACGGGCTGAAGATGCCCAACCCGTTCGTGATCGGCTC
AGGCCCCCCCGGCACCAACTACACCGTCATGAAGCGCGCCTTCGACGAGGGCTGGGGCGG
CGTCATCGCCAAGACCGTGTCCTTGGATGCTGGAAAAGTTATCAATGTAACTCCTCGCTA
TGCTCGGCTCAGGGCGGATCCTAATGGATCTACCAAGAGTCCTATCATTGGATGGCAAAA
CATTGAACTTATCAGTGATCGACCTCTCGAGACAATGCTTAACGAGTTCAAGCAACTGAA
GAAGGAATACCCTGATAGGATACTCATTGGCTCAATAATGGAGGAATACAACAAAGCTGC
ATGGCATGAGCTTATTGAACGTGTTGAGGAATCCGGAGTGGACGCTCTTGAGATAAATTT
CTCATGCCCACATGGCATGCCTGAGCGAAAAATGGGTGCCGCTGTTGGACAGGATTGTGC
CTTGTTAGAGGAGGTTTCTGGTTGGATAAATGAGAAGGCCACTGTGCCTGTTTGGTCTAA
GATGACTCCTAACATTACAGATATTACACAGCCTTCAAGGATTGCTCTTAAGTCAGGGTC
TGAAGGAATTGCCGCTATCAACACAATTATGAGTGTGATGGGAATTGATCTCAAAACTTT
GCGCCCAGAACCTTGTGTGGAGGGGTACTCTACACCTGGGGGATATTCTGCGAGAGCTGT
GCACCCTATAGCACTTGCGAAAGTCATGCAGATAGCAAGACTGATCAAAGAGGAATTTCC
TGAAGGTCGGTCTCTCTCCGCCATTGGCGGTGTTGAAACCGGCAATGATGCTGCTGAGTT
TATTCTACTTGGCGCAGATACCGTACAGGTATGTACAGGTGTAATGATGCATGGTTATGG
CCTTGTGAAGAAGCTCTGTACAGAGTTGCAGGATTTTATGAGAATGCACGACTTTTCATC
AATTGAAGATTTCCGAGGGGCGTCTCTCCCCTACTTCACGACGCACACGGACCTGGTGCA
GCGGCAGAAGGAGGCGATCAAGCAGCGCAAGGCCATCAGGATGGGCCTGCAGTCGGACAA
GGACTGGACCGGCGACGGGTTCGTCAAGGAGACGGAGAGCATGGTCTCCAACTGAATGCC
GCAGCCCTGTCTCCGATCCGATCCCCCTCGCGGCGCCCTTCCTTTCCGCCATACTTCCTT
CCACTTGTGATTACGCCCGGACCTTAGAAACGAACAGTGGGAACCTTTGCTGCACCTCAT
TCAATAAATCATGATGATAGTAAAAAAAAAAAAAAAAATTCCTTTTTTTCCTTCTCACCG
TGTCGTTCAAGGAGGGGCGACGAGCGAGCCAGTGCGACGACGGTCCCGGTCTGGCCCTGG
ACCTGGACCGAGTCATGAGTTCACTCACTAGTCGGCAGTTGATAATTATCTTCTCCTTTG
CGACCGCCGGTCTCCTCCAGACACATTATGTTCTTTCATTGTTCTGACCCTTTTGACATA
GGATCTGATCCCGTTTGTAAAAAAAATAAAAAAAATCATACCCTTCT

Homology of Contig U35_13855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g50350.1	415	protein\|dihydroorotate dihydrogenase protein, putative, expressed
Brachypodium v1_2	Bradi3g59890.1	420
Arabidopsis v10	AT3G17810.1	426	\| Symbols: PYD1 \| pyrimidine 1 \| chr3:6094279-6096289 FORWARD LENGTH=426