barSeed - Barley Seed Development Database

Probe CUST_34661_PI390587928

Source Contig U35_25834

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34661_PI390587928	Hv_44K_v2	TTATTTCCGCAACTCCTAACAAGAGAAGTAGAACCAAGCAGAAATCAGTTAAGGGCTCCA	491	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357441	2087	2e-24	541 - 600	100	60 / 60	plus	ABC14247
MLOC	MLOC_68829.1	1206	2e-24	693 - 752	100	60 / 60	plus	ABC14247
MLOC	MLOC_68829.2	897	2e-24	459 - 518	100	60 / 60	plus	ABC14247
JLOC1	JLOC1_45575.2	935	8e-25	423 - 482	100	60 / 60	plus
JLOC1	JLOC1_45575.1	1021	8e-25	509 - 568	100	60 / 60	plus
Harvest21	ABC25296	556	3e-25	492 - 551	100	60 / 60	plus
Harvest35	U35_25834	558	3e-25	492 - 551	100	60 / 60	plus

Contig Sequence (558 bp)

>U35_25834 558 Hv_44K_v2
TGTGCCCGTCGTCCCGTCGCGAACAGCAGGGGAACAGCGGCGGCGTTCCTCTCAGCGGCG
TAGCTGTGGGCTTCCAAGAACGAATTACAGTTTAGTGCTTCCAAAACTAAACGTGATGAG
TGAGAGGATGCAGGTTACCTATTCGCGTAGAGCTGTCTCTAAGAACAGTGAAATCAAGAA
AGATGAACAAACAGTCATAGAAAAGGAAGATGACACTGAAAGCACATTGGAGATAGAGCG
AATCAGAGGTGACCCTAGTATGCTCCAATCCATGACAGTGAAAGAACTCAAGGAACTCAC
AAGGAGGATGGGAGTTGCTGCGAGAGGTAACAAAAAAGATTTGGTATCAGCTTTGTTGGA
ATCTCTGGGTGAGGAAGTAATTGGTAAAGATGGAACATCAACCATTGAGCAGATTGACCC
ATCAGAAGTACCTTCGAAAAGAAAAGGTGCCGCTTCTGTAGTGGTTGAACAAAAGGTAGA
AACGTCTGAAGTTATTTCCGCAACTCCTAACAAGAGAAGTAGAACCAAGCAGAAATCAGT
TAAGGGCTCCACTCCGAA

Homology of Contig U35_25834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g58680.1	500	4e-54	protein\|apurinic endonuclease-redox protein, putative, expressed
Brachypodium v1_2	Bradi2g52540.2	517	1e-73
Arabidopsis v10	None