barSeed - Barley Seed Development Database

Probe CUST_34657_PI390587928

Source Contig U35_37810

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34657_PI390587928	Hv_44K_v2	CTGCGATCTTGGCCTTTTAATCCCTGAAAGATGCATATTGCCATTATGAGTTATCAATTG	542	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.159	0.921	1.326	1.232	0.413	0.640
Raw	21.982	28.165	35.727	53.324	5.384	10.544

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC33519	613	3e-25	543 - 602	100	60 / 60	plus
Harvest35	U35_37810	613	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_37810 613 Hv_44K_v2
GCAGGGGCACCATCCTCGGCTTAAGAGGTCCAAGTCGAACCAGTACGAGAACACGTCGCT
GGTGCAGATCGAGGGGGTGAACACCAAGGAGGACGTGGCGTGGTACGGTGGCAAGCGCCT
GGCGTACGTGTACAAGGCCAAGACCAAGAGCAACGGCACCCACTACCGCTGCCTCTGGGG
CAAGATCACCCGCCCGCACGGCAACTCCGGCGTCGTCCGCGCCCAGATCAAGTCCAACCT
CCCCGCCGAGTCCATGGGGCGCAAGGTCAGGGTGTTCATGTACCCGAGCAGCATCTAAGG
TTAGCGTCTGCTGCACTGTCGATGATGTTTGTTTAAGTCTGCTGCTTTGCCCCGTGTGAT
TCTACTCTAGCATGCGTGTTACATTTTGTCCTTCGCAATGAGAATTACTAGGATGGATGT
GATCGATTTCCATGTGTAGTCACAATGTATAACATGAATGCCTGAAGTGTATGAACTTCA
ATGTGTGTCCATCGAGAGATTGATGCTTTGGGTTGGGTCATTCATTGAGTTGATTTGGGA
TTCTGCGATCTTGGCCTTTTAATCCCTGAAAGATGCATATTGCCATTATGAGTTATCAAT
TGATATTTTAGTA

Homology of Contig U35_37810 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54470.1	113	2e-53	protein\|60S ribosomal protein L35a-3, putative, expressed
Brachypodium v1_2	Bradi4g16690.3	113	1e-56
Arabidopsis v10	None