- Probe CUST_34652_PI390587928
- Source Contig U35_37819
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34652_PI390587928 | Hv_44K_v2 | TAACGTACAGCGGAGGCATGAAAAGAAGGCTCAGTGTGGCAATATCATTAATAGGAGACC | 547 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55872.7 | 3488 | 2e-24 | 2709 - 2768 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.6 | 3518 | 2e-24 | 2739 - 2798 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.10 | 3174 | 2e-24 | 2710 - 2769 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.3 | 2989 | 2e-24 | 2525 - 2584 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.8 | 3354 | 2e-24 | 2815 - 2874 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.5 | 3271 | 2e-24 | 2615 - 2674 | 100 | 60 / 60 | plus | ABC17276 |
| MLOC | MLOC_55872.1 | 3361 | 2e-24 | 2932 - 2991 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.2 | 3236 | 2e-24 | 2807 - 2866 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.11 | 3094 | 2e-24 | 2329 - 2388 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.9 | 2785 | 2e-24 | 2403 - 2462 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.12 | 3041 | 2e-24 | 2393 - 2452 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.13 | 3137 | 2e-24 | 2489 - 2548 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.4 | 3144 | 2e-24 | 2542 - 2601 | 100 | 60 / 60 | plus | ABC17093 ABC17276 |
| JLOC1 | JLOC1_36080.8 | 3229 | 8e-25 | 2381 - 2440 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36080.7 | 3470 | 8e-25 | 2622 - 2681 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36080.6 | 3299 | 8e-25 | 2451 - 2510 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36080.5 | 3091 | 8e-25 | 2243 - 2302 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36080.4 | 3246 | 8e-25 | 2398 - 2457 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36080.3 | 3498 | 8e-25 | 2557 - 2616 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36080.2 | 3347 | 8e-25 | 2499 - 2558 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36080.1 | 3175 | 8e-25 | 2327 - 2386 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37819 | 684 | 3e-25 | 548 - 607 | 100 | 60 / 60 | plus |
Contig Sequence (684 bp)
>U35_37819 684 Hv_44K_v2 CAAGCTAGCTGTTCGAGGATTATCTCTGGCCCTACCAAAAGGCCAATGCTTCGGAATGCT TGGCCCAAATGGAGCTGGGAAAACATCATTCATTAGTATGGTACAGTACTGAAACAGCAT ACAGTGGCATTTTTATGGAAGTTGCATAAAGTATTGCCACACACCTTGATTAACTTTGTT CTGATCTTTCCTCAGATGGTTGGACTTACTAAACCTACATCTGGTACTGCTTATACACAT GGAATGGATATAAGGATGGATATGGATGACATATATACAAATATGGGCGTGTGCCCACAG CATGAGTATTTACTGCAACTTATAGCTTATCTGGACATGAGCTTTCTTTGCCACATCAGA CTGTCTTCTCATGGTAACTGCTCTTGTCTGAAATGCAGCTTACTTTGGGAAACATTAACG GGAAAAGAGCATCTATTTTTCTATGCTAGGTTGAAGAATGTTAAAGGTGCTGCATTAGTG AAGGCTGTTGATGATTCTCTGAAAAGTGTAAATCTGTTTCATGGTGGTGTTGGTGACAAG CAAGTGGTAACGTACAGCGGAGGCATGAAAAGAAGGCTCAGTGTGGCAATATCATTAATA GGAGACCCCANAGTCGTTTACATGGATGAGCCAAGTACAGGACTAGATCCAGCATTCAGA AATAACCTGTGGAACATTGTGAAG
Homology of Contig U35_37819 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g08020.1 | 915 | 2e-57 | |
| Arabidopsis v10 | AT5G61740.1 | 848 | 5e-58 | | Symbols: ATATH14, ATH14 | ABC2 homolog 14 | chr5:24808484-24812597 FORWARD LENGTH=848 |