barSeed - Barley Seed Development Database

Probe CUST_3464_PI390587928

Source Contig U35_3402

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3464_PI390587928	Hv_44K_v2	GCAGTTTGCAAGTACTTGGCACAACTTATTATTTGTCGTGAGAATATGGCTGCTAAAAAA	1122	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39050.1	982	7e-23	13 - 73	98	60 / 61	minus	ABC10307
MLOC	AK251442.1	1116	3e-21	1063 - 1116	100	54 / 54	plus	ABC10307 ABC13587
JLOC1	JLOC1_25439.1	1258	4e-23	1034 - 1094	98	60 / 61	plus
Harvest21	ABC10307	1219	1e-23	1123 - 1183	98	60 / 61	plus	ABC10307
Harvest35	U35_3402	1219	3e-25	1123 - 1182	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_3402 1219 Hv_44K_v2
CCAGCCCCCGAGCCGGAATGCGACTACTACCACCAGCTCTCGCTGTTGGTTGTTCCGCTG
CAGAGATTCCGCGACTCCATCTCCATATCCCACCAGCCAAAACCAGACCGCCGCACGCCC
GCACGCCCGCACGCCTCCCCTGACCGCCGGAATCCGCCCGGATCCGCTGCCTCACCTGCT
GGCGCTGCGGCCCCACACTTCTATGCAGTGGGTGGAGGCGGCGGTGATGCGTGATTGGTC
GCGGCGGCGTTAGGTGCTCTTCTCCGGCCGCGGCGAGCTAGGCCATGGGGTGCATCCAGT
CCACGCCGAAGCGGAGGCAGCACCCTGCTGGCTACGAGGACCCCGTACAACTCGCCTCCC
AGACCGCCTTCAGCGTCAGCGAAGTCGAGGCGTTGTTTGAGCTGTTCAAGAGCATTAGTG
GATCAGTGATCGATGATGGTTTGATCAATAAGGAAGAGTTCCAGCTTGCATTGTTCAAAA
ACACAAGGAAGGAAAATCTTTTCGCTAATCGGATATTCGACCTTTTCGATGTCAAGAAAA
GGGGCGTCATCGATTTTGGCGACTTTGTTCGAGCTTTAAATGTATTCCATCCAAATTTTC
CAGTGGAAGAGAAAATTGATTTTTCCTTCAAGCTATATGATATGGATGGTACAGGCTTTA
TAGAACGGAAGGAGGTAAAGCAGATGTTGATTGCTCTTCTAGGCGAATCGGAGATGAGAT
TATCTGACGAGATTGTTGAGACAATCCTGGACAAGACCTTTTCAGATGCTGATACGAATC
AGGATGGTAAAATAGATAGAACAGAATGGGAGAATTTTGTGTCCAGGAATCCTTCCTTGT
TGAAGATAATGACTCTTTCGTACCTCAAGGACATAACAACAACATTTCCCAGCTTTGTGT
TTCATTCAGAGGTTGATGATATCATTACATGACGGTGATCCTCACAAAGATGTACAGTTA
ACAGAAAGAAGGAACCTATCATCAGAATATATGCAACGATGCAACATGCTTGATGCTAGC
TAATGTTGCTCGAGAGTCGAGAAATAGTTTTTCTTTCTTTCTGGGTGGTGTTCATTACAC
CGAGAGTTAGTCTTGTTAAATATTCATGTATGTTTGTGAGCTGCAGTTTGCAAGTACTTG
GCACAACTTATTATTTGTCGTGAGAATATGGCTGCTAAAAAAACTGTTGTTCAACCTGAC
TAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41510.1	214	4e-133	protein\|calcineurin B, putative, expressed
Brachypodium v1_2	Bradi3g33700.1	215	5e-139
Arabidopsis v10	AT4G17615.1	213	7e-113	\| Symbols: CBL1, ATCBL1, SCABP5 \| calcineurin B-like protein 1 \| chr4:9817142-9818995 FORWARD LENGTH=213