- Probe CUST_34648_PI390587928
- Source Contig U35_13863
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34648_PI390587928 | Hv_44K_v2 | ACGTTCAAGCAGCGGCTCAAGTACAACCCGCCGATGAACCTCGACTTCCTGCGGTCGCTG | 438 | GeneList: darkgreen MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.697 | 1.123 | 3.585 | 1.852 | 1.006 | 0.858 |
| Raw | 3.372 | 11.448 | 35.626 | 29.550 | 4.571 | 3.999 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369526 | 4491 | 2e-24 | 3899 - 3958 | 100 | 60 / 60 | plus | ABC01861 ABC01864 ABC04659 |
| MLOC | AK376660 | 1346 | 2e-24 | 786 - 845 | 100 | 60 / 60 | plus | ABC01861 ABC01864 |
| MLOC | MLOC_66485.3 | 3640 | 7e-23 | 2923 - 2982 | 98 | 59 / 60 | plus | ABC01861 ABC01864 |
| MLOC | MLOC_66485.2 | 4135 | 7e-23 | 3451 - 3510 | 98 | 59 / 60 | plus | ABC01861 ABC01864 |
| MLOC | MLOC_66485.4 | 1010 | 7e-23 | 422 - 481 | 98 | 59 / 60 | plus | ABC01861 ABC01864 |
| MLOC | MLOC_66485.1 | 1713 | 7e-23 | 1179 - 1238 | 98 | 59 / 60 | plus | ABC01861 ABC01864 |
| JLOC1 | JLOC1_43816.1 | 1604 | 4e-23 | 904 - 963 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01853 | 632 | 3e-25 | 37 - 96 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01861 | 1374 | 1e-23 | 771 - 830 | 98 | 59 / 60 | plus | ABC01861 |
| Harvest35 | U35_13863 | 511 | 3e-25 | 439 - 498 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13780 | 1421 | 1e-23 | 774 - 833 | 98 | 59 / 60 | plus |
Contig Sequence (511 bp)
>U35_13863 511 Hv_44K_v2 TCGAGCACTGTTGGCCGGTCGCTCCCGCGCCCCCACGCAAGCGCACTCTCTCGCTCTCTA GCCGCGCAGCCGATACAAATCGTGCGTGCCGGCGTCAGTCACGCCACGCACGGTGCGCGT CCACGCCGAGTGGAGCGGAGCTGAGCAGAGCAGGGCTTTGCTCGACCGGCAATGGCGGGA GCCTGCTCGTGCGCCGGCCTCCTGGCGCTGGTCGTGCTCGCGTGCATCGCCGACGCTGCG ACCGCGCAGCTGCGGCTGGACGGCAGGTCGTTCAGCAAATCCATCGTGAAGCACGTCCTC CCGGGCCCCGGCTTCGACCTCAACCAGCTCAACGCGCTCTTCGCCACCAACGGCCTCACC CAGTTCGACATGATCGCGCTCTCCGGTGCGCACACGATCGGGGTGACGCACTGCGACAAG TTCGTGCGCCGGATCTACACGTTCAAGCAGCGGCTCAAGTACAACCCGCCGATGAACCTC GACTTCCTGCGGTCGCTGCGCAAGGTGTGCC
Homology of Contig U35_13863 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |