barSeed - Barley Seed Development Database

Probe CUST_34647_PI390587928

Source Contig U35_13864

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34647_PI390587928	Hv_44K_v2	TACGGTTTGGTCCGGTTAATCAACAGGTATATCCCATACTATGAATGAATATCAAGTTAT	1597	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_87.3	914	2e-24	828 - 887	100	60 / 60	plus	ABC01861 ABC01864
MLOC	MLOC_87.4	2279	2e-24	2214 - 2273	100	60 / 60	plus	ABC01861 ABC01864
MLOC	MLOC_87.1	1956	2e-24	1895 - 1954	100	60 / 60	plus	ABC01861 ABC01864
MLOC	MLOC_87.2	2301	2e-24	2240 - 2299	100	60 / 60	plus	ABC01861 ABC01864
JLOC1	JLOC1_68.2	2274	8e-25	2040 - 2099	100	60 / 60	plus
JLOC1	JLOC1_68.1	1993	8e-25	1759 - 1818	100	60 / 60	plus
Harvest21	ABC01864	800	3e-25	714 - 773	100	60 / 60	plus	ABC01864
Harvest35	U35_13864	1684	3e-25	1598 - 1657	100	60 / 60	plus
Harvest35	U35_34780	652	1e-23	585 - 641	100	57 / 57	plus

Contig Sequence (1684 bp)

>U35_13864 1684 Hv_44K_v2
ATTGCAGCTCGTAACACTCCATCGCTCGTCTCCAGTCTACTCCTCTAGCCAGCTGAGCTC
CTTCGCCGGCGGGGCGAGCCCAGCTCATCTCATCTCATCATATCATCATCTTCCCCATCT
ATATAAGCCCGCCTCTCTCCCCACTTAAGGCACGCCGAGTGTTAGCTAGCAGTACACAGA
TAGTAAGTGTGTGAGGGCAGCGGCAAGTGCGAGCATCAATTAAGGTCAGGCAGAGCAGGG
AGCCAGGGAGAGAGGGATAAGCAAAGCAAGGAGACCCATAGTTAAGAGTCCAAGGGAGGG
AGGGAGACACGCAGCTCCTATTGTAGTGGATGGCAATGAGGTCGAGGGGGTTGCAGATGC
GGCCGCGGCGGCAGCAGAGCCAGAGCCAGAGCCAGAGCGTCCTCGTCGGCGTGTTGCTGC
TGCTGCTGGCGACGGCGGCGCCGCAGGTCGCAGCGGCGGCGGGGCTGAGCCAGAACTACT
ACGCCAAGACTTGCCCCAACGTGGAGGCGCTGGTCCGCGGCGCCGTCACCCAGAAGCTGC
AGGAGACCTTCAACGCCGCGCCCGGCACCCTCCGCCTCTTCTTCCACGACTGCTTCGTCA
GGGGGTGCGACGCGTCGGTGCTCATCTCCGGGCCGGGCGACGAGCACAGCGCGGGCGCGG
ACACGACGCTGTCGCCGGACGCGCTGGACCTCATCACCCGCGCCAAGGCCGCCGTCGACG
CCGACGCCAGCTGCTCCAACAAGGTCTCCTGCGCCGACATCCTCGCCCTCGCCACCCGCG
ACGTCGTCCAGCAGGCGGGAGGGCCGTCGTACCCGGTGGAGCTGGGGCGGCTGGACGGCA
AGGTGGGCACGCGGGCCGTGGTGAAGCACAGCCTCCCCGGCGCCGGCTTCACGCTGGACC
AGCTCAACAAGCTCTTCGCCGTCAACGGCCTCACCCAGACCGACATGATCGCCCTCTCAG
GGGGGCACACGATCGGGGTGACGCACTGCGACAAGTTCGTGAGGCGGCTGTACACGTTCA
AGGGGGCGAGGCCGCAGTACAGCCCGCCGATGAACCTGGCCTTCCTGCGGCAGATGCGGG
GGACGTGCCCGCTCAACTACAGCCCGGCCACCGTCGCCATGCTCGACGCCGTCACGCCGC
TCAAGTTCGACAACGGCTACTACCAGACGCTGCAGCAGCAGAAGGGCCTGCTGTCGTCCG
ACCAGGTGCTCTTCGCCGACCGCCGCTCCCGGGCCACCGTCAACCACTTCGCCGCCAACC
AGACCGCCTTCTTCGACGCCTTCGTCGCCGCCATGGCCAAGCTCGGCCGCATCGGGGTCA
AGACCGCCGGCTCCGACGGCGAGATCCGGCGGGTCTGCACCAAGGTCAACTAATATCAAT
ATATCATGGTAGCTGCAGCTGCCATGGTAGTAGCATCACACGTACATTCAGTAGAGAGCG
TAAATGGATGGACGGGCCAATCAATTCCATATGCTCACACATGTCGATCGATCATATTGT
CATAGCCGATTTGTTCCAGCCCGATTCTTTTCTTCACCATGTAATAAAGCATGTAGATGC
CATGGGATAGGAGGCGAAGTTGCGTCGATGTAAATGTTACGGTTTGGTCCGGTTAATCAA
CAGGTATATCCCATACTATGAATGAATATCAAGTTATTCTTTGATGCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_13864 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48030.1	338	0.0	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g33740.1	328	0.0
Arabidopsis v10	AT2G18980.1	323	6e-112	Peroxidase superfamily protein \| chr2:8233419-8235294 REVERSE LENGTH=323