barSeed - Barley Seed Development Database

Probe CUST_34642_PI390587928

Source Contig U35_13869

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34642_PI390587928	Hv_44K_v2	GTCGTCTGGATGTGCTACGATGGAATGGAAATTGAAGCTGTTTGTTTACCCTTGAAAAAA	493	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362441	654	3e-22	494 - 549	100	56 / 56	plus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30671 ABC32179 ABC43349
MLOC	MLOC_77075.1	679	3e-22	177 - 232	100	56 / 56	plus	ABC00174 ABC00980
JLOC1	JLOC1_51404.1	526	1e-22	177 - 232	100	56 / 56	plus
Harvest21	ABC00979	570	3e-25	492 - 551	100	60 / 60	plus
Harvest21	ABC00980	786	5e-23	264 - 319	100	56 / 56	minus	ABC00980
Harvest35	U35_13869	572	3e-25	494 - 553	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_13869 572 Hv_44K_v2
ACAGCACCAGGTCACCACCACCGTTCCTCACATTCCACATCCGCTCGCTCGCTCGCAGCT
CGAGATCGTCAGCCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCG
CCAAGCGCCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCC
GGCGTCTGGCGCGCCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCC
GCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGC
ACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCACTCAAGCGCCAGGGCC
GCACCCTCTACGGATTCGGCGGCTAGGCCATCAGCTAGCTTTGTTTGGCACACAGTGGTA
GTAGTGTTCGTGGCCGGTCCTGGGTTGTAATCGCCGCATCTCGCTGCTCTTTGCCCTGGC
CTTGGTTTCGTTTGTCGTCTGGATGTGCTACGATGGAATGGAAATTGAAGCTGTTTGTTT
ACCCTTGAAAAAAAAAAAAAAAAAGCGGCCGC

Homology of Contig U35_13869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g19360.1	104	7e-51
Arabidopsis v10	AT5G59970.1	103	8e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103