barSeed - Barley Seed Development Database

Probe CUST_3462_PI390587928

Source Contig U35_3404

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3462_PI390587928	Hv_44K_v2	CATACAGTAAACCATTATATATGCTCTAGCCCTTGTTTCCGTACGCACGCACTCTTTGAG	593	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.256	1.158	1.070	1.068	0.598	0.454
Raw	1054.893	1561.508	1245.930	1913.804	386.008	317.791

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353911	826	2e-24	604 - 663	100	60 / 60	plus	ABC08276 ABC41280
MLOC	MLOC_3661.1	729	7e-23	256 - 315	98	59 / 60	minus	ABC08276 ABC41280
JLOC1	JLOC1_2202.1	839	4e-23	416 - 475	98	59 / 60	plus
Harvest21	ABC08276	820	3e-25	588 - 647	100	60 / 60	plus	ABC08276
Harvest21	ABC08275	653	3e-25	594 - 653	100	60 / 60	plus
Harvest35	U35_33133	713	3e-25	521 - 580	100	60 / 60	plus
Harvest35	U35_3405	820	3e-25	588 - 647	100	60 / 60	plus
Harvest35	U35_3404	653	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_3404 653 Hv_44K_v2
GCCACGACTCATCCGTCCTCTGCATCCGTCGCCGCCGGCGCGCGACCTCCACACGCCACC
CGCCGCGATGGCCGCCGCCGCCTCCTCCTCCGCCACGGCGCTGGCCGGCGCTTCCCTCCC
GCCCCCCCTATCCGCTCGCCTGCGGCCCGTTGGGTTCTCCGTGGCGCTCCCCCGGACGGC
CCCTCCTCCCCCGGCCCTGCGGCTCCGGTCGGTCCGGCGCCTGGCGGCGACGGAGGGAGG
AGGAGGCGGAGTGGCGGCGGGCATGAAGGAGACGCTGGACAAGGTGGTGACGGCGCACAA
GGTGGTGCTGTTCATGAAGGGGACCAAGGACTTCCCGCAGTGCGGCTTCTCCCACACGGT
GGTGCAGATCCTGCGCTCCCTCGACGTGCCCTTCGAGACGCTCGACGTGCTCGCCAACGA
CGCGCTCCGCCAGGGCCTCAAGGAGTACTCCAGCTGGCCCACCTTCCCGCAGCTCTACAT
CGACGGCGAGTTCTTCGGCGGCTGCGACATCACCCTCGAGGCATACAAGAGTGGGGAACT
GCAGGAGACGCTGGAGAAAGCAATGTGCTCTTAGCGCANATGACGAGGGACATCATACAG
TAAACCATTATATATGCTCTAGCCCTTGTTTCCGTACGCACGCACTCTTTGAG

Homology of Contig U35_3404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63420.1	169	4e-63	protein\|OsGrx_S14 - glutaredoxin subgroup II, expressed
Brachypodium v1_2	Bradi1g01570.1	170	9e-67
Arabidopsis v10	AT3G54900.1	173	1e-52	\| Symbols: CXIP1, ATGRXCP \| CAX interacting protein 1 \| chr3:20341850-20342371 REVERSE LENGTH=173