barSeed - Barley Seed Development Database

Probe CUST_34622_PI390587928

Source Contig U35_49802

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34622_PI390587928	Hv_44K_v2	CAAAAGAGGAAATTCTTGCAGGGCAAGAGAGGGTATTGAAAAACAACCGTTCCAACTTCC	351	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36997.1	2081	3e-22	510 - 568	98	59 / 60	plus	ABC10100
JLOC1	JLOC1_23896.1	2092	1e-22	510 - 568	98	59 / 60	plus
Harvest21	ABC51716	411	3e-25	352 - 411	100	60 / 60	plus
Harvest35	U35_49802	411	3e-25	352 - 411	100	60 / 60	plus

Contig Sequence (411 bp)

>U35_49802 411 Hv_44K_v2
CTCGCCGACGGCCTCCTCGCCGACTTCAAGAGCATCTTCGACAAGTTCACCTTCAAGGAG
CCCCCCGCCGCCGAGGATGGGGAGAAGAAGGACGAGGCCGCCGATGCGGCGAAGAAGGGG
TCGGGGTCTGACTCGGACGACGACGAGCAGGAGACCCAGCAGAAGAAGAAGGAAGGGGGC
ATCTCCAACAAGAAGAAAAAGCTGGAGCAAAGGATGAAGATTGCGGAGCTGAAGCAGATA
TGCAACAGGCCCGACGTTGTCGAAGTTTGGGATGCGACTGCATCAGACCCCAAGTTCCTT
GTCTATCTGAAGTCTTACAGGAACACAGTACCTGTCCCAAGGCACTGGTCTCAAAAGAGG
AAATTCTTGCAGGGCAAGAGAGGGTATTGAAAAACAACCGTTCCAACTTCC

Homology of Contig U35_49802 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None