barSeed - Barley Seed Development Database

Probe CUST_3461_PI390587928

Source Contig U35_3405

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3461_PI390587928	Hv_44K_v2	GTGGTCTATTGTATACCTAGTATCAATCGCTTGCATGATGGTTTCCTGTGACATGGAGGG	760	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.495	1.406	1.083	1.010	0.359	0.324
Raw	247.744	370.446	247.073	351.876	45.225	45.330

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3661.1	729	3e-21	83 - 142	97	58 / 60	minus	ABC08276 ABC41280
JLOC1	JLOC1_2202.1	839	2e-21	589 - 648	97	58 / 60	plus
Harvest21	ABC08276	820	3e-25	761 - 820	100	60 / 60	plus	ABC08276
Harvest35	U35_3405	820	3e-25	761 - 820	100	60 / 60	plus

Contig Sequence (820 bp)

>U35_3405 820 Hv_44K_v2
TCAACCACAGCCACGACTCATCCGTCCTCTGCATCCGTCGCCGCCGGCGCGCGACCTCCA
CAAGCCACCCGCCGCGATGGCCTCCGCCACGGCGCTGGCCGGCGCGTCCCTCCCGCTCCC
CCTCTCCGCTCGCCCGCGGCCTGTTCGGTTCTCCGTGGCGCTCCCCCGGACGGCCCCTCC
TCCCCCGGCCCTGCGGCTCCGGTCGGTCCGGCGCCTGGCGGCGACGGAGGGAGGAGGAGG
CGGAGTGGCGGCGGGCATGAAGGAGACGCTGGACAAGGTGGTGACGGCGCACAAGGTGGT
GCTGTTCATGAAGGGGACCAAGGACTTCCCGCAGTGCGGCTTCTCCCACACGGTGGTGCA
GATCCTGCGCTCCCTCGACGTGCCCTTCGAGACGCTCGACGTGCTCGCCAACGACGCGCT
CCGCCAGGGCCTCAAGGAGTACTCCAGCTGGCCCACCTTCCCGCAGCTCTACATCGACGG
CGAGTTCTTCGGCGGCTGCGACATCACCCTCGAGGCATACAAGAGTGGGGAACTGCAGGA
GACGCTGGAGAAAGCAATGTGCTCTTAGCGCAAATGACGAGGGACATCATACAGTAAACC
ATTATATATGCTCTAGCCCTTGTTTCCGTACGCACGCACTCTTTGAGCCCACGGCAGAGA
ACTGGAGATGCAGTCGCTAAGTTGTAGATGATTCAAAAATATGAAGCAGCGAGTTACAAA
TGTACAATGCACTTTGGCTATGGTAAATTTTGTGCAATGTGTGGTCTATTGTATACCTAG
TATCAATCGCTTGCATGATGGTTTCCTGTGACATGGAGGG

Homology of Contig U35_3405 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63420.1	169	3e-62	protein\|OsGrx_S14 - glutaredoxin subgroup II, expressed
Brachypodium v1_2	Bradi1g01570.1	170	6e-66
Arabidopsis v10	AT3G54900.1	173	6e-52	\| Symbols: CXIP1, ATGRXCP \| CAX interacting protein 1 \| chr3:20341850-20342371 REVERSE LENGTH=173