- Probe CUST_34618_PI390587928
- Source Contig U35_13876
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34618_PI390587928 | Hv_44K_v2 | CAAGCAGAAAGATGCATGATATATCGATCGAGCTGGGAGCCTGAACCTGAGATGATGATT | 268 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_58958.1 | 969 | 2e-24 | 788 - 847 | 100 | 60 / 60 | plus | ABC01192 ABC26813 ABC52628 |
| MLOC | MLOC_58958.2 | 1663 | 2e-24 | 82 - 141 | 100 | 60 / 60 | minus | ABC01192 ABC01198 ABC26813 ABC52628 |
| JLOC1 | JLOC1_38333.1 | 1871 | 8e-25 | 1493 - 1552 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01199 | 537 | 3e-25 | 269 - 328 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01192 | 1606 | 3e-25 | 1356 - 1415 | 100 | 60 / 60 | plus | ABC01192 |
| Harvest21 | ABC26818 | 458 | 1e-23 | 309 - 368 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC26813 | 476 | 1e-23 | 196 - 255 | 98 | 59 / 60 | plus | ABC26813 |
| Harvest21 | ABC01196 | 861 | 1e-23 | 210 - 269 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC52628 | 452 | 6e-22 | 342 - 401 | 97 | 58 / 60 | plus | ABC52628 |
| Harvest35 | U35_13876 | 537 | 3e-25 | 269 - 328 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28131 | 476 | 1e-23 | 196 - 255 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_13805 | 713 | 1e-23 | 445 - 504 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_13769 | 1606 | 1e-23 | 1356 - 1415 | 98 | 59 / 60 | plus |
Contig Sequence (537 bp)
>U35_13876 537 Hv_44K_v2 GCACGAGGCGCTCACCGGCTCCAACGACGAGTCTTGGTGTCAGGGCCTCGACGGCCTCGC CTCCCGGGAGGCCGCCTACTACCAGCAGGGCGCCCGCTTCGCCAAGTGGCGCACCGTGGT CAGCTGCGTGCCAAGGCCAACTCGCTCGCGCAGCTCGGAAAGTACACCAGCGACGGCGAG GCCGCCGAGGCCAAAGAGGGCATGTTCGTCAAAAACTACAGCTATTAATCGAACCATTCC AATCAACACTACTACGTACGTTCCTTACCAAGCAGAAAGATGCATGATATATCGATCGAG CTGGGAGCCTGAACCTGAGATGATGATTACTGTATTTTCTAGATCTTTTTTTACACGTTA ATTTGCCTCTCGATATGCACTTTACTGTTCCAGTAGATTATTCTAAAGCTACTTTTACGT GTGTGATCCATGGATTTGCATGGTTACTGCAAAATTTTGCATGTACGTACTTGTACTTGT CCCTAAAGACAAATATAATAAGATATAGTTAGCATACTATAAAAAAAAAAAAAAAAA
Homology of Contig U35_13876 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |