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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3460_PI390587928Hv_44K_v2AGTGATATTGTCAGTGCGCAGGATAGCGCTACAACATAACTAACGTACAGAGGATCAGCT615GeneList: tan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6470.9141.5932.1411.0530.855
Raw 47.502105.242160.188354.47258.85052.453



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC0774111946e-22614 - 6739758 / 60plus
Harvest35U35_34066783e-25616 - 67510060 / 60plus
Harvest35U35_340712076e-22614 - 6739758 / 60plus



Contig Sequence (678 bp)

>U35_3406 678 Hv_44K_v2
GCCCTCCCAGCCGCCGCTCTCCCTCCCTCTCGCATCTGCTCTCCACCGACGACCCAAGGG
AGACGACGGCCAGCGGCGGGGAAGCAACCGGACGGCCAGCGGCGCCTCCTCCTCTCGTCC
TACCTGCAGCACCTCCTCCTCCCGGCCCGATCCGCAGCGCCTCCTCTACGCCGATCTGCC
GCGCCCACCCTATCTTCCTCGAGCTGCAGCAGCTCCTCCTCCTGAAGGATTGGATCGATG
GCCGTGGCGACGGCGGCAGCAGAGGTGGTGCTGCACCACATGGGGCCCGTCCCTCGAGTG
GAAGAGACGAGTAATGCGGCGGCGGCGGCGGAACTCGAGGGAGACGACGAAGAGATCCTG
CGATTCATGGACTCGGCGGAAGGCTACCTCCTCCTGATGGATTCGCTCTCCTCCGCTCTT
CGCCAGGGTTGGCTTGATTTGGCAAGTGCGCGTCACTCGATGGGCGCATCACGTGTTTCA
AGTACACTGTTTGATCATAAAGAGCAATCTGCAGCCACTACGCTGCAAGTAGTTTATCCT
GCAGACTTGCCACCATCAGAATCAAACCCGCATTTTTCTCTATCAAAGTGGTGTTTGAAA
GAAGAATCAAACTCCAGTGATATTGTCAGTGCGCAGGATAGCGCTACAACATAACTAACG
TACAGAGGATCAGCTGCT



Homology of Contig U35_3406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi5g15310.22205e-55
Arabidopsis v10None