barSeed - Barley Seed Development Database

Probe CUST_34607_PI390587928

Source Contig U35_16038

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34607_PI390587928	Hv_44K_v2	CTGGCCTGGAAGGCTAGGTGAGCAGGTGTGGAAATTCAACCATTGTTGCAATTCAAAAAA	2130	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43410.1	2586	3e-21	36 - 89	100	54 / 54	minus	ABC04728
JLOC1	JLOC1_28068.1	1672	2e-21	1533 - 1586	100	54 / 54	plus
Harvest21	ABC04728	2202	3e-25	2131 - 2190	100	60 / 60	plus	ABC04728
Harvest35	U35_16038	2202	3e-25	2131 - 2190	100	60 / 60	plus

Contig Sequence (2202 bp)

>U35_16038 2202 Hv_44K_v2
CCCCAATCCGCGCCTTGGTGCGGGCGAGGTAGCGGCGGTAGACGAGACGAGCAAAGCTGA
GCGCCGCCACCCATGGAGTCGCTCGCCCTCCTCACCGCCAAGCCCGGCCTCTCCCTCCGC
GCGGGGCCCCGCCTCCCCCTCCCGCGCCTCCGGCCCGCCCGCGCGTCCCTCTCCACCGCG
TCCAGCTCCAGGCCCGCCGCTCTCCAATCCCCACTCCTCTCGTCGAGGCCCCCCTCCTCG
CAGGACGCCGTCCTGGGATATGGGCTCTTGAAGCGCAGGGCTAGTGCTGGTGCTGGCGTC
TCTTGCAGCGCGGCGGCCGCGGCCGCGGCGGCGGAGCCACAGCCCCCGGCGCTGCCGGAG
GTCAAGAAGTTCCTCGGCGTGGGCCTCCCGACGCTGAAGAAGATCGTGCCCCTGGGCCTG
ATGTTCTTCTGCATCCTCTTCAACTACACCATCCTTCGGGACACCAAGGACGTGCTGGTG
GTGACTGCCAAGGGGAGCAGCGCGGAAATCATCCCCTTCCTCAAGACCTGGGTCAACCTG
CCCATGGCCATCGGCTTCATGCTGGCATACTCCAAGCTCTCCGACGTGCTCTCCCGGGAG
GCGCTCTTCTACACCGTCATATTCCCCTTCATCGCCTTTTTCGGCCTCTTCGGCTTCGTG
CTCTACCCGCTCAGGGATGCCATCCATCCCACCGCTCTCGCCGACAAGCTTCTGGCGGCG
CTCGGCCCGAGCTTCCTTGGACCTGTAGCTATCCTCAGGATTTGGAGCTTCTGCTTATTC
TATGTCATGGCCGAGCTATGGGGCAGCGTCGTTGTCTCTGTCCTCTTCTGGGGTTTTGCC
AACCAGATCACCACAGTTGATGAAGCAAAAGAGTTCTACCCTCTGTTTGGCCTTGGGGCA
AATATTGCCCTTATCTTTTCCGGGCGTACTGTGAAGTATTTCTCAAATTTGCGGAAGACA
ATGGGTCCAGGAGTTGATGGTTGGGAGGTATCTTTGAAAGGAATGATGGGCATAGTGGTA
CTTCTTGGGCTTGTCATTACTTCCATTTATTGGGGAGTGAACAAGCTTGTTTTGAATGAC
CCTTCTCTTCCAAAATCTGATCACAAGAAGAAAAAGAACAAACCTAAGCTTAGCATGAAA
GAGAGTATGAAAGTTCTGATCTCTTCAAAATATGTGAGGGACCTTGCTACCTTAGTTGTT
GCATACGGCATTAGTATCAATCTTGTGGAAGTCACATGGAAATCGAAGCTCAAGGCACAG
TTCCCCAGTCCAAACGAGTACTCATCCTTCATGGGTGATTTCTCTACTGCAACTGGAATT
GCAACTTTCACGATGATGCTGTTAGGTCGGATTATATTCCAAAGATTTGGCTGGGGTGTA
GCCGCCATGATCACCCCCACAGTTTTGTTGGTGACTGGCGTTGGTTTCTTCTCTCTGATT
TTGTTTGGGCAACCATTGACTCCCCTGCTTGCCACGTGGGGTATGACCCCTCTTCTTGCG
GCTGTTTATGTGGGTGCCCTGCAGAACATATTTAGCAAGAGTGCAAAGTACAGTTTATTC
GACCCGTGCAAAGAAATGGCCTATATTCCTTTGGATGGAGATATGAAGTTGAAGGGAAAG
GCAGCCATTGATGTTGTCTGCAACCCATTGGGCAAGTCCGGTGGTGCGCTGATCCAACAG
TTTCTGATCCTGATATTTGGCTCTTTGGCAAACTCGACGCCCTACCTTGGCGGTATACTG
TTGGTCATCGTGCTTGCATGGCTAGGTGCGGCAAGATCATTGGACAAGCAATTCTCAAGC
TTGGCCAAAGAGGATCTCCGAAAGGAGATGTCAAAAGAGAAAGTAGAAACGGCAACGCCC
AAGGAATCCGAGGCGGCTACTGATGTATTGGTGGAGCAATCAAATGGAACAGCAGCGACT
GAAACAACTGGAACTGATAACTCACCATCAAACTCATCTCCAGCTCAATAGACCGGTCAA
CCTTGTTTGGAGAAGCCATAGGCAGGAGGAGATTGGTTATGTTGAGCAGAAATAATGATG
AAGGAACGATTGGCGATTTCTTCCAAATTTGTAACAGTGAGCAGCATCAAGAGGTGCTGG
TTAGTTTGTAATGTAAGCAAATTTTGACAACTGGCCTGGAAGGCTAGGTGAGCAGGTGTG
GAAATTCAACCATTGTTGCAATTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16038 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g45910.1	643	protein\|plastidic ATP/ADP-transporter, putative, expressed
Brachypodium v1_2	Bradi2g45140.1	633
Arabidopsis v10	AT1G80300.1	624	\| Symbols: NTT1, ATNTT1 \| nucleotide transporter 1 \| chr1:30191954-30194280 FORWARD LENGTH=624