barSeed - Barley Seed Development Database

Probe CUST_34603_PI390587928

Source Contig U35_16039

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34603_PI390587928	Hv_44K_v2	TACCTGTAGCTGGTTTGTTTTGTCGCTCCGTAGATATGGAACTCTTTTTCTTGATTTTTT	2094	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.195	1.456	1.064	0.725	0.288	0.240
Raw	3970.787	7475.683	4856.407	5096.800	729.553	661.972

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72084.2	2226	2e-24	2115 - 2174	100	60 / 60	plus	ABC04728 ABC04729
MLOC	MLOC_72084.1	1349	2e-24	174 - 233	100	60 / 60	minus	ABC04729
JLOC1	JLOC1_47953.1	2378	8e-25	2198 - 2257	100	60 / 60	plus
Harvest21	ABC04729	2267	3e-25	2095 - 2154	100	60 / 60	plus	ABC04729
Harvest35	U35_16039	2294	3e-25	2095 - 2154	100	60 / 60	plus

Contig Sequence (2294 bp)

>U35_16039 2294 Hv_44K_v2
CCCTTATCTCCTCCATCCTCCATCCCGAGAATTTTAGCCCCCATGGAGTCCGGCCTCGTC
GCAAGCCACCGCCTTCGCCTCCCGGCCCTCCCCTCCGCGGCCCATGTCCACCTCCTCCGC
CACCGCCGCCTCGCGGCCACGCCTCTCCGACTCCCCACCATCCCGACCCCTCTCCGCCAG
CCCGCCGCGCTCCCGCTCCGCCCGTGCCTCAGGCCTCCCCGCGCCGCCTCCGTCGCTTCC
CCCGCGCCGGTGCCCGGCGATGCGCCGGACAATTCCCGCAAGTTCCTGGGCGTGGACGCG
CTCACGCTCAAGAAGATCGTGCCCCTGGGTCTCATGTTCTTCTGCATCCTCTTCAACTAC
ACCATCCTGAGGGACACCAAGGACGTGCTCGTCGTCACCGCCAAGGGGAGCAGCGCCGAG
ATCATCCCTTTCCTCAAGACGTGGGTCAACCTCCCCATGGCCATCGGCTTCATGCTTCTC
TACTCCAAGCTCGCCGACGTGCTCTCCAAGGAGGCGCTCTTCTACACCGTCATCTTCCCC
TTCATCGCCTTCTTCGGCGTCTTCGGATACGTGCTCTACCCTATGCGCGACGCCATCCAC
CCCACGGCGCTCGCCGACCGCCTCCTCGCGTCGCTCGGCCCCAGCTTCCTGGGGCCCGTC
GCCATCCTACGCGTCTGGAGTTTCTGCCTCTTCTACGTTATGGCGGAGCTCTGGGGCAGC
GTTGTCATCTCCGTCCTGTTTTGGGGATTTGCCAATCAGATTACCACGGTTGAAGAGGCT
AAAGAGTTTTACCCACTGTTCGGGCTTGGGGCCAATGTGGCTCTCATCTTCTCTGGTCGC
ACGGTGAAATACTTCTCAAACATGAGGCAGAATTTGGGTCCAGGGGTGGACGGATGGGCT
ATTTCATTGAAGGGCATGATGAGCATAGTGGTTGTGCTGGGTTTCGTCATTGCCGGTATC
TATTGGGGAGTGAACAAGTATGTTATTGATAAAACATCTCTGCCGGTCGAACGCAAGAAG
AAGAATAAGCCAAAGCTTAGTATGGGGGAGAGTTTGAAGGTGCTGGTATCATCTCGATAT
GTGAGGGATCTTGCCACATTGGTCGTTGCTTATGGTATAAGCATCAACCTTGTAGAGGTG
ACATGGAAATCAAAATTGAAGGCACAGTTCCCAAGTCCTAACGAGTATTCTTCATTCATG
GGTGATTTCTCAACGGCTACTGGCATAGCTACGTTTACAATGATGTTGTTAGGGAGAGTA
ATTCTTAGAAAATTCGGGTGGGGAGTTGCAGCTACGATCACCCCTGCAGTGTTGCTTGTC
ACTGGAGTTGGATTCTTCTCACTGCTTTTGTTTGGTGAGCCACTCACTCCTCTTCTAGCC
ACGTTTGGGATGACGCCTTTGCTTGCTGCGGTCTTCGTTGGGGCACTACAGAACATTTTC
AGTAAGAGTGCAAAGTACAGTTTGTTCGATCCTTGCAAAGAAATGGCGTACATTCCTTTG
GACGAGGACATGAAGGTCAAAGGTAAGGCAGCAATAGATGTTGTATGCAACCCACTGGGA
AAATCTGGAGGTGCCTTGATCCAGCAGTTCATGATCTTGTCATTCGGATCTCTTGCCAAC
TCAACGCCGTACCTTGGAGGAATATTGCTGGTGATTGTCATCGCGTGGTTGGGCGCCGTA
AGGTCCCTTGACTCGCAGTTCTCTCCCCTGGCAAAGCAAGATCTGGAGAGGGAACAGAAG
CTGAAAGCAGAGGCGGTAGAAACGACAGCCCAAGTCGTTGGGACAGGAAACGGATCCCTT
CAAGAAAATGTTGCGAGCCAGAGCTCCACAAATGGTACGGTCATCAAACAGTCGCAAGAA
CCCGAAAGTGCCACCACTGAAAAATCTAGCAAGAAGTCTCAATAAGTTTACATCCCCAGA
AATTTAGTTAGTACGAGTTTTTGATGGAAGCAAACGTTGCTTGGTTGGGCCTGCCACGGG
GAGCTGCTGGGAAAGGCAGCAGAGTGATTGACAAGGAAAATAAGATGGCCTGTTCTTCTG
TTGTTGTAGCATATTTTTGACTTCATGCGAGTATCTATAGCTGTTTATTGGGAGTACCTG
TAGCTGGTTTGTTTTGTCGCTCCGTAGATATGGAACTCTTTTTCTTGATTTTTTTATATT
ACAATTTTGCGGAAAATCTGCTTTCACATATCTATTAGTAAAAAAAAAAAAGTTACTGCT
ACTTGTTTTGCTACTGCTTGTTATTTAAATAAATCCTAATCGTTCTGAACACTGATCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_16039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g11740.1	631	protein\|plastidic ATP/ADP-transporter, putative, expressed
Brachypodium v1_2	Bradi3g07830.1	624
Arabidopsis v10	AT1G80300.1	624	\| Symbols: NTT1, ATNTT1 \| nucleotide transporter 1 \| chr1:30191954-30194280 FORWARD LENGTH=624