- Probe CUST_345_PI390587928
- Source Contig U35_9382
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_345_PI390587928 | Hv_44K_v2 | TGTACACTCATCTGGTTATTAGCAACTAGAAAGTGACTCACGCAAACTGTGAGGGTTTTC | 325 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.015 | 0.628 | 2.861 | 2.065 | 4.204 |
| Raw | 3.167 | 30.580 | 1142.453 | 6958.873 | 2159.053 | 4717.297 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_15198.1 | 398 | 8e-25 | 330 - 389 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25282 | 430 | 3e-25 | 326 - 385 | 100 | 60 / 60 | plus | ABC25282 |
| Harvest35 | U35_9382 | 430 | 3e-25 | 326 - 385 | 100 | 60 / 60 | plus |
Contig Sequence (430 bp)
>U35_9382 430 Hv_44K_v2 ATAGCAATGAAGGTGGCGACTTCTGGCTTCCTCCTATGGCTACTTCTAACATCCTGTGGG CTGGTGTTGCATGTGCTTGGAGTTGGAGTTGGACTTGGAGCAGATGAATGTTGGGTTCTA AGTCGTGACTACTACTACTATTGCATGAGGACTGCCAAATGTAGGAGAGCTTGCATGGAG CACCACTACGTTAACGGGCGATGCTGGTGGGCATTTCCTTATTTGTTGCCCTTGTGCGAG TGCTTGCGCCCAAAATGCGCTCCTACGAGAGCACTCGATCCTTGATAGTAATCCCCGGAT GTGTGTCCGAGCATGTTGCATTGGTTGTACACTCATCTGGTTATTAGCAACTAGAAAGTG ACTCACGCAAACTGTGAGGGTTTTCATAATAAAATAGTACTAAATATATGTTTAAAAAAA AAAAAAAAAA
Homology of Contig U35_9382 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |